>VHH634 (VHH634Q) /CSM/VH/VHH6-B/VHH634Q.Seq.d/
XXXXXXXXXXAATAATCCAAAAAACGTATTTAATTTGGACCAAGCTCAAACTGCTAATAC
CAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCACCAGATCCATTGGTTTTTAT
TAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGATCTCTACAGGTAGTTCAAC
TACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATATGAGATACATTAAATCATA
TCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAGAAAAAAGGCTTTACTTCAAGATT
TAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATC
ACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTACATCAGAGACAACTCACAC
ATGGAAACAAACTCTCACTGAGGGAACTTATATTGTTTATCAAAATGTTCTTGTTTATGC
ATATACAATAGTATTATCACTAAATCAAACTAATACTATAAATCAATATAACCCAGGTAT
GAATTTGAGATATATCCAACAAATAGATCGTGCTGTTATGTTTGTACCAATCAATCGTGA
TGATCCATTCACTCTTCGTTATCAAGATGCCACATGGGATCCAGTGGAGTANATTCATTA

---NPKNVFNLDQAQTANTNFAIDRHIKMKVPPDPLVFIKMPRSKLVWAWVKISTGSSTT
SLIGSFTPCAAYMRYIKSYPVVGTVEQTMEKKKGFTSRFNASTEIKASASAGFFGCEASL
EVTTGFEYEETVTSETTHTWKQTLTEGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMN
LRYIQQIDRAVMFVPINRDDPFTLRYQDATWDPVEXIH

Frame A:
---iiqktyliwtklkllipilplivilk*kfhqihwfllkcldqn*fghg*rslqvvql
lv**avlllvlhi*dtlnhiqllvplnklwkrkkallqdlmpvlklrqvhqqgslvvkhh
sk*plvsnmkkllhqrqlthgnklslrelilfikmflfmhiq*yyh*iklil*initqv*
i*disnk*ivllclyqsivmihslfvikmphgiqwsxfi


Frame B:
---*skkri*fgpssnc*yqfch*ssy*nesstrsigfy*nasikislgmgedlyr*fny
*fnrqfyslcciyeih*iisscwyr*tnygkekrlyfki*cqy*n*gkcisrvlwl*sit
rsdhwfri*rncyirdnshmetnsh*gnlyclskcsclciynsiitksn*yyksi*prye
feiyptnrsccyvctnqs**sihsslsrchmgssgvxsl


Frame C:
---NPKNVFNLDQAQTANTNFAIDRHIKMKVPPDPLVFIKMPRSKLVWAWVKISTGSSTT
SLIGSFTPCAAYMRYIKSYPVVGTVEQTMEKKKGFTSRFNASTEIKASASAGFFGCEASL
EVTTGFEYEETVTSETTHTWKQTLTEGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMN
LRYIQQIDRAVMFVPINRDDPFTLRYQDATWDPVEXIH

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH634 (VHH634Q) /CSM/VH/VHH6-B/VHH634Q.Seq.d/                       1283   0.0
VHG246 (VHG246Q) /CSM/VH/VHG2-B/VHG246Q.Seq.d/                       1271   0.0
VHB316 (VHB316Q) /CSM/VH/VHB3-A/VHB316Q.Seq.d/                       1271   0.0
VFL719 (VFL719Q) /CSM/VF/VFL7-A/VFL719Q.Seq.d/                       1271   0.0
VFI774 (VFI774Q) /CSM/VF/VFI7-D/VFI774Q.Seq.d/                       1271   0.0
VFH148 (VFH148Q) /CSM/VF/VFH1-B/VFH148Q.Seq.d/                       1271   0.0
VFF853 (VFF853Q) /CSM/VF/VFF8-C/VFF853Q.Seq.d/                       1271   0.0
VFD740 (VFD740Q) /CSM/VF/VFD7-B/VFD740Q.Seq.d/                       1271   0.0
VHP850 (VHP850Q) /CSM/VH/VHP8-C/VHP850Q.Seq.d/                       1267   0.0
VHD159 (VHD159Q) /CSM/VH/VHD1-C/VHD159Q.Seq.d/                       1267   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore  germination protein.   692   0.0    2
U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.    82   2e-50  6
M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds.    78   2e-10  1
AC024672|AC024672.2 Homo sapiens chromosome 4 clone RP11-572L13 map 4, WORKING DRAFT SEQUENCE, 45 unordered pieces.    34   0.096  4
AP004633|AP004633.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666D11, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40   0.19   3
AC079349|AC079349.6 Homo sapiens BAC clone RP11-436A7 from 4, complete sequence.    34   0.26   8
AC128338|AC128338.3 Rattus norvegicus clone CH230-47L24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   0.48   8
AC123906|AC123906.4 Rattus norvegicus clone CH230-243B8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.58   9
AC083885|AC083885.3 Homo sapiens chromosome UNK clone RP11-1245A23, WORKING DRAFT SEQUENCE, 33 unordered pieces.    38   0.62   8
CC445510|CC445510.1 PUHCP02TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa420B04, DNA sequence.    46   0.63   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    53   9e-06
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    46   0.001
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    42   0.016
AY693892_1(AY693892|pid:none) HIV-1 isolate IR-153_18 from Iran ...    33   5.7
CP000361_1016(CP000361|pid:none) Arcobacter butzleri RM4018, com...    33   5.7

 psg: 0.78  gvh: 0.44  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHH634 is cyt

>VHH634Z.Seq
NNNNNNNNNNAATAATCCAAAAAACGTATTTAATTTGGACCAAGCTCAAACTGCTAATAC
CAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCACCAGATCCATTGGTTTTTAT
TAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGATCTCTACAGGTAGTTCAAC
TACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATATGAGATACATTAAATCATA
TCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAGAAAAAAGGCTTTACTTCAAGATT
TAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATC
ACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTACATCAGAGACAACTCACAC
ATGGAAACAAACTCTCACTGAGGGAACTTATATTGTTTATCAAAATGTTCTTGTTTATGC
ATATACAATAGTATTATCACTAAATCAAACTAATACTATAAATCAATATAACCCAGGTAT
GAATTTGAGATATATCCAACAAATAGATCGTGCTGTTATGTTTGTACCAATCAATCGTGA
TGATCCATTCACTCTTCGTTATCAAGATGCCACATGGGATCCAGTGGAGTANATTCATTA