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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHH243
Library VH
(Link to library)
Clone ID VHH243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15666-1
Original site URL
Representative seq. ID VHH243P
(Link to Original site)
Representative DNA sequence 
>VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCATC
ATCATCATCATTATTTCAACAAAGCGTTCGTGGXXXXXXXXXXCTATTATAGAACAATCA
GCATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATTATGATT
GAAGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTAACCTCA
ATTTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGATTATCAA
GGTAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAATTATTG
AAACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATTCAAAAG
ATTGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTACAAGAT
TATCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCATACGTT
GACATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAATCGTAGT
GCCTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAATGTATT
GCTTTGTTTGCTGGTAAAATAGATTTCCCAATGTCTGGTAATATCTTACCTCGTTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVLPSVGGASASNQSSSSSSLFQQSVR---

---IIEQSALELENKNEYQSAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFG
KQLFNDYQGRLKTTSTARTSYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISES
EIDSKVQDYRFLSPHITRNFSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQD
LQSRTQCIALFAGKIDFPMSGNILPRL
Translated Amino Acid sequence (All Frames) 
Frame A:
kvlfny*pniydk*ikkegkkneckgngf**fik*iqsnnq*niiifksnwviiiqh*kk
strdw*yiktie*fnfiknsifksigtkcisrf*n**kiwirsksfskefi*yqyiiihr
csistnry*wlfkgsi*eyhfeynl*hskkdikrvsipl*tnins*le*r*kifrgdfrs
kty*sftkcwwc*r**siiiiiiiistkrsw---

---ll*nnqhwn*rirmnikvqlnfgl*lksiqef*rfiiveyryy*pqfqvkeinyinl
vsnysmiikvd*kqpqqqepvi*plsny*nfaisltyttkksikrqfkrlkiwksyqsln
qksiqrykiivsfhhisleisllsfkhtltsllnntiy*itltnllivvpyllvvnkpfk
ifnlelnvllcllvk*isqclvisylv*

Frame B:
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVLPSVGGASASNQSSSSSSLFQQSVR---

---yyrtisigire*e*iskcn*ildyd*rvsksfrdl***nigiinlnfk*krsiisiw
*aiiq*lsr*iknnlnsknqlfsl*aiietlrfl*piqqrkvsrgnskd*kfgnltnl*i
rnrfkgtrlsfpfttyh*kflfyhssir*hhc*tipftk*l*riy*s*clicws*tnhsr
ssi*nsmycfvcw*nrfpnvw*yltsf

Frame C:
svvqlltqhl**inkkggkkk*m*rkwilmiyqinpik*sieyhhfqvqlgyhhstlkei
ykrlvihqnn*mi*lhqklhfqihwnqmyfkilklienmd*iqkf*qriylisihhhsqm
fnqyqqilmvi*rfnlrisf*iqfvtfkkrhqksfnpimnkhqfmigieikni*rrf*vk
nilkfyqvlvvlalvinhhhhhhyfnkafv---

---IIEQSALELENKNEYQSAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFG
KQLFNDYQGRLKTTSTARTSYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISES
EIDSKVQDYRFLSPHITRNFSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQD
LQSRTQCIALFAGKIDFPMSGNILPRL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/                       1223   0.0
VHE374 (VHE374Q) /CSM/VH/VHE3-D/VHE374Q.Seq.d/                       1219   0.0
VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/                       1219   0.0
VHA241 (VHA241Q) /CSM/VH/VHA2-B/VHA241Q.Seq.d/                       1219   0.0
SHL644 (SHL644Q) /CSM/SH/SHL6-B/SHL644Q.Seq.d/                       1219   0.0
SHJ831 (SHJ831Q) /CSM/SH/SHJ8-B/SHJ831Q.Seq.d/                       1219   0.0
SHJ680 (SHJ680Q) /CSM/SH/SHJ6-D/SHJ680Q.Seq.d/                       1219   0.0
SHJ541 (SHJ541Q) /CSM/SH/SHJ5-B/SHJ541Q.Seq.d/                       1219   0.0
SHC447 (SHC447Q) /CSM/SH/SHC4-B/SHC447Q.Seq.d/                       1219   0.0
AHO331 (AHO331Q) /CSM/AH/AHO3-B/AHO331Q.Seq.d/                       1219   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440976) Dictyostelium discoideum cDNA clone:ddv45e12, 3' ...  1219   0.0    1
(BJ439217) Dictyostelium discoideum cDNA clone:ddv39d19, 3' ...  1219   0.0    1
(BJ437769) Dictyostelium discoideum cDNA clone:ddv35g08, 3' ...  1219   0.0    1
(BJ436459) Dictyostelium discoideum cDNA clone:ddv31a12, 3' ...  1219   0.0    1
(BJ408899) Dictyostelium discoideum cDNA clone:dds47g12, 3' ...  1219   0.0    1
(BJ407878) Dictyostelium discoideum cDNA clone:dds43o20, 3' ...  1219   0.0    1
(BJ407723) Dictyostelium discoideum cDNA clone:dds43n08, 3' ...  1219   0.0    1
(BJ407657) Dictyostelium discoideum cDNA clone:dds43a11, 3' ...  1219   0.0    1
(BJ404414) Dictyostelium discoideum cDNA clone:dds28n12, 3' ...  1219   0.0    1
(BJ356156) Dictyostelium discoideum cDNA clone:dda59n07, 3' ...  1219   0.0    1
dna update 2008.11. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    81   9e-14
U63919_1(U63919|pid:none) Xenopus laevis An4a mRNA, complete cds.      81   9e-14
BX470170_7(BX470170|pid:none) Zebrafish DNA sequence from clone ...    79   4e-13
(Q7ZU29) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    79   4e-13
DQ156149_2(DQ156149|pid:none) Salmo salar clone BAC S0085O16, pa...    77   1e-12
U77595_1(U77595|pid:none) Danio rerio dye mRNA, complete cds.          77   1e-12
BT045693_1(BT045693|pid:none) Salmo salar clone ssal-rgf-528-376...    77   2e-12
(A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    72   5e-11
(Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    71   7e-11
CR859933_1(CR859933|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1...    71   7e-11
protein update 2009. 7.12
PSORT 

 psg: 0.57  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 28.0 %: nuclear

>> prediction for VHH243 is cyt
5' end seq. ID VHH243F
5' end seq. 
>VHH243F.Seq
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCATC
ATCATCATCATTATTTCAACAAAGCGTTCGTGGNNNNNNNNNN
Length of 5' end seq. 643
3' end seq. ID VHH243Z
3' end seq. 
>VHH243Z.Seq
NNNNNNNNNNCTATTATAGAACAATCAGCATTGGAATTAGAGAATAAGAATGAATATCAA
AGTGCAATTGAATTTTGGATTATGATTGAAGAGTATCCAAGAGTTTTAGAGATTTATAAT
AGTAGAATATCGGTATTATTAACCTCAATTTCAAGTGAAAGAGATCAATTATATCAATTT
GGTAAGCAATTATTCAATGATTATCAAGGTAGATTAAAAACAACCTCAACAGCAAGAACC
AGTTATTTAGCCTTTGAGCAATTATTGAAACTTTGCGATTTCTTTGACCTATACAACAAA
GAAAAGTATCAAGAGGCAATTCAAAAGATTGAAAATTTGGAAATCTTACCAATCTCTGAA
TCAGAAATCGATTCAAAGGTACAAGATTATCGTTTCCTTTCACCACATATCACTAGAAAT
TTCTCTTCTATCATTCAAGCATACGTTGACATCATTGTTAAACAATACCATTTACTAAAT
AACTTTGACGAATTTACTAATCGTAGTGCCTTATTTGCTGGTCGTAAACAAACCATTCAA
GATCTTCAATCTAGAACTCAATGTATTGCTTTGTTTGCTGGTAAAATAGATTTCCCAATG
TCTGGTAATATCTTACCTCGTTTAA
Length of 3' end seq. 625
Connected seq. ID VHH243P
Connected seq. 
>VHH243P.Seq
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCATC
ATCATCATCATTATTTCAACAAAGCGTTCGTGG----------CTATTATAGAACAATCA
GCATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATTATGATT
GAAGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTAACCTCA
ATTTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGATTATCAA
GGTAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAATTATTG
AAACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATTCAAAAG
ATTGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTACAAGAT
TATCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCATACGTT
GACATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAATCGTAGT
GCCTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAATGTATT
GCTTTGTTTGCTGGTAAAATAGATTTCCCAATGTCTGGTAATATCTTACCTCGTTTAA
Length of connected seq. 1248
Full length Seq ID -
Full length Seq. -
Length of full length seq. -