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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHH237
Library VH
(Link to library)
Clone ID VHH237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12499-1|Contig-U16189-1
Original site URL
Representative seq. ID VHH237P
(Link to Original site)
Representative DNA sequence 
>VHH237 (VHH237Q) /CSM/VH/VHH2-B/VHH237Q.Seq.d/
AANAAAATTAAAATGAAAATAATAATTNCATTATTATTTATTTTGTTAAGTTTTATTAAA
ATTTCTACATGTNTTGATTGTAAANATTTTTATTCNCCAAAAGGGAATCCATGTCCATGT
TTATCAAATCCATGNGGTTTCGTTGTTTCATGTTATGCATTCTCTGATGGAAGTTNTTTA
TGNGGATGTAATCTTGTAACTGAAGNGTTTGATGATGGAACAAAAACTTGNGTTGATAAA
AATNAATGTGCXXXXXXXXXXGTTTACTCAAACCCTAAAAAATACAACATGTACAGTAAC
AGTTACAATTGAAGAAGTTAAACAAGATTCAGAATTCTCATTTGCAGGTACAACTTTTAC
AGTTTCAAAAGGTTTGGTTAAATTTACAATTTCAATTGCAAATTATCAATATTCTTCATT
TTTAAATACTCTTCAATTGGAAATGATTTCAATGGCTGGTAAAGTAGAAGATTCAAATTA
TAATAATGATTGTAATAATAAAGATACAGAAATTGAAACCAATTCAGCTGATCAATCAAC
AACTTCATTTAATGTTATTAAAATCTCTAAAAATAATAAAATCTTAGGTGCAAGATTTAT
CAACAGAGTTATATCTGATGGAAAACCAACATTTTTATCAACAACTATTAAAAATGAAAC
TGATTCAATTATTGTAGTTTTAAATTTACCACATTGTACAAAAGAATGTCTTATTGATCC
AGATTTTTCATTACTTGTTGATCCTCAATTTAAACCTGAATGCGAATCAAAATCTCGTAA
ATGGGTAGTACCAGTTGCTGTAGTTGTATCTGTTGTTGGTTTTTCAGGTTTGGCAGTTGC
TGGTTTTATTTTATATAAAAAACAAAGTATTGCCATTAAGGTACAAATCCATAAATTAAA
AAGATTTAACCAAGATTAAATGTAATATTATT
sequence update 2002.10.25
Translated Amino Acid sequence 
XKIKMKIIIXLLFILLSFIKISTCXDCKXFYSPKGNPCPCLSNPXGFVVSCYAFSDGSXL
XGCNLVTEXFDDGTKTXVDKNXC---

---FTQTLKNTTCTVTVTIEEVKQDSEFSFAGTTFTVSKGLVKFTISIANYQYSSFLNTL
QLEMISMAGKVEDSNYNNDCNNKDTEIETNSADQSTTSFNVIKISKNNKILGARFINRVI
SDGKPTFLSTTIKNETDSIIVVLNLPHCTKECLIDPDFSLLVDPQFKPECESKSRKWVVP
VAVVVSVVGFSGLAVAGFILYKKQSIAIKVQIHKLKRFNQD*m*yy
Translated Amino Acid sequence (All Frames) 
Frame A:
XKIKMKIIIXLLFILLSFIKISTCXDCKXFYSPKGNPCPCLSNPXGFVVSCYAFSDGSXL
XGCNLVTEXFDDGTKTXVDKNXC---

---vysnpkkynmysnsyn*rs*trfrilicrynfysfkrfg*iynfncklsiffifkys
signdfngw*srrfkl***l***ryrn*nqfs*sinnfi*cy*nl*k**nlrckiyqqsy
i*wktnifinny*k*n*fnycsfkfttlykrmsy*srffitc*ssi*t*mrikis*mgst
sccsciccwffrfgscwfyfi*ktkych*gtnp*ikki*prlnvil

Frame B:
xklk*k**xhyylfc*vllkflhvlivxifixqkgihvhvyqihxvslfhvmhslmevxy
xdvil*lkxlmmeqklxlikxnv---

---FTQTLKNTTCTVTVTIEEVKQDSEFSFAGTTFTVSKGLVKFTISIANYQYSSFLNTL
QLEMISMAGKVEDSNYNNDCNNKDTEIETNSADQSTTSFNVIKISKNNKILGARFINRVI
SDGKPTFLSTTIKNETDSIIVVLNLPHCTKECLIDPDFSLLVDPQFKPECESKSRKWVVP
VAVVVSVVGFSGLAVAGFILYKKQSIAIKVQIHKLKRFNQD*m*yy

Frame C:
xn*nennnxiiiyfvkfy*nfymx*l*xflfxkresmsmfiksmxfrcfmlcil*wkxfm
xm*scn*xv**wnknlx**kxmc---

---llkp*kiqhvq*qlqlkklnkiqnshlqvqllqfqkvwlnlqfqlqiinilhf*ilf
nwk*fqwlvk*kiqiiimiviikiqklkpiqlinqqlhlmllkslkiiks*vqdlstely
lmenqhfyqqllkmkliqll*f*iyhivqknvlliqifhyllilnlnlnanqnlvng*yq
ll*lylllvfqvwqllvlfyiknkvlplryksin*kdltkikcnii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH237 (VHH237Q) /CSM/VH/VHH2-B/VHH237Q.Seq.d/                       1608   0.0
VHA317 (VHA317Q) /CSM/VH/VHA3-A/VHA317Q.Seq.d/                       1245   0.0
VHG284 (VHG284Q) /CSM/VH/VHG2-D/VHG284Q.Seq.d/                       1082   0.0
VHI688 (VHI688Q) /CSM/VH/VHI6-D/VHI688Q.Seq.d/                        289   4e-77
SHE695 (SHE695Q) /CSM/SH/SHE6-D/SHE695Q.Seq.d/                         74   4e-12
FC-IC0127 (FC-IC0127Q) /CSM/FC-IC/FC-IC0127Q.Seq.d/                    74   4e-12
CHM677 (CHM677Q) /CSM/CH/CHM6-D/CHM677Q.Seq.d/                         62   2e-08
AHJ786 (AHJ786Q) /CSM/AH/AHJ7-D/AHJ786Q.Seq.d/                         52   2e-05
AFE571 (AFE571Q) /CSM/AF/AFE5-C/AFE571Q.Seq.d/                         52   2e-05
SHH287 (SHH287Q) /CSM/SH/SHH2-D/SHH287Q.Seq.d/                         46   0.001
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440994) Dictyostelium discoideum cDNA clone:ddv45i10, 3' ...  1328   0.0    1
(BJ436382) Dictyostelium discoideum cDNA clone:ddv31b05, 3' ...  1243   0.0    1
(BJ440481) Dictyostelium discoideum cDNA clone:ddv43g22, 3' ...  1082   0.0    1
(BJ422257) Dictyostelium discoideum cDNA clone:ddv45i10, 5' ...   317   4e-82  1
(BJ442138) Dictyostelium discoideum cDNA clone:ddv48o22, 3' ...   289   9e-74  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    80   5e-20  3
(BJ383981) Dictyostelium discoideum cDNA clone:ddc47i20, 3' ...    62   2e-17  4
(BJ406037) Dictyostelium discoideum cDNA clone:dds33m24, 3' ...    74   1e-15  4
(AU271361) Dictyostelium discoideum gamete cDNA clone:FC-IC0...    74   6e-15  4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    74   2e-11  12
dna update 2008.11. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...   185   2e-45
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   182   2e-44
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   167   5e-40
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...   166   1e-39
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...   164   3e-39
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...   163   7e-39
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...   162   2e-38
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...   159   2e-37
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...   159   2e-37
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...   157   5e-37
protein update 2009. 7.12
PSORT 

 psg: 0.99  gvh: 0.72  alm: 0.24  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.23  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VHH237 is exc
5' end seq. ID VHH237F
5' end seq. 
>VHH237F.Seq
AANAAAATTAAAATGAAAATAATAATTNCATTATTATTTATTTTGTTAAGTTTTATTAAA
ATTTCTACATGTNTTGATTGTAAANATTTTTATTCNCCAAAAGGGAATCCATGTCCATGT
TTATCAAATCCATGNGGTTTCGTTGTTTCATGTTATGCATTCTCTGATGGAAGTTNTTTA
TGNGGATGTAATCTTGTAACTGAAGNGTTTGATGATGGAACAAAAACTTGNGTTGATAAA
AATNAATGTGCNNNNNNNNNN
Length of 5' end seq. 261
3' end seq. ID VHH237Z
3' end seq. 
>VHH237Z.Seq
NNNNNNNNNNGTTTACTCAAACCCTAAAAAATACAACATGTACAGTAACAGTTACAATTG
AAGAAGTTAAACAAGATTCAGAATTCTCATTTGCAGGTACAACTTTTACAGTTTCAAAAG
GTTTGGTTAAATTTACAATTTCAATTGCAAATTATCAATATTCTTCATTTTTAAATACTC
TTCAATTGGAAATGATTTCAATGGCTGGTAAAGTAGAAGATTCAAATTATAATAATGATT
GTAATAATAAAGATACAGAAATTGAAACCAATTCAGCTGATCAATCAACAACTTCATTTA
ATGTTATTAAAATCTCTAAAAATAATAAAATCTTAGGTGCAAGATTTATCAACAGAGTTA
TATCTGATGGAAAACCAACATTTTTATCAACAACTATTAAAAATGAAACTGATTCAATTA
TTGTAGTTTTAAATTTACCACATTGTACAAAAGAATGTCTTATTGATCCAGATTTTTCAT
TACTTGTTGATCCTCAATTTAAACCTGAATGCGAATCAAAATCTCGTAAATGGGTAGTAC
CAGTTGCTGTAGTTGTATCTGTTGTTGGTTTTTCAGGTTTGGCAGTTGCTGGTTTTATTT
TATATAAAAAACAAAGTATTGCCATTAAGGTACAAATCCATAAATTAAAAAGATTTAACC
AAGATTAAATGTAATATTATT
Length of 3' end seq. 681
Connected seq. ID VHH237P
Connected seq. 
>VHH237P.Seq
AANAAAATTAAAATGAAAATAATAATTNCATTATTATTTATTTTGTTAAGTTTTATTAAA
ATTTCTACATGTNTTGATTGTAAANATTTTTATTCNCCAAAAGGGAATCCATGTCCATGT
TTATCAAATCCATGNGGTTTCGTTGTTTCATGTTATGCATTCTCTGATGGAAGTTNTTTA
TGNGGATGTAATCTTGTAACTGAAGNGTTTGATGATGGAACAAAAACTTGNGTTGATAAA
AATNAATGTGC----------GTTTACTCAAACCCTAAAAAATACAACATGTACAGTAAC
AGTTACAATTGAAGAAGTTAAACAAGATTCAGAATTCTCATTTGCAGGTACAACTTTTAC
AGTTTCAAAAGGTTTGGTTAAATTTACAATTTCAATTGCAAATTATCAATATTCTTCATT
TTTAAATACTCTTCAATTGGAAATGATTTCAATGGCTGGTAAAGTAGAAGATTCAAATTA
TAATAATGATTGTAATAATAAAGATACAGAAATTGAAACCAATTCAGCTGATCAATCAAC
AACTTCATTTAATGTTATTAAAATCTCTAAAAATAATAAAATCTTAGGTGCAAGATTTAT
CAACAGAGTTATATCTGATGGAAAACCAACATTTTTATCAACAACTATTAAAAATGAAAC
TGATTCAATTATTGTAGTTTTAAATTTACCACATTGTACAAAAGAATGTCTTATTGATCC
AGATTTTTCATTACTTGTTGATCCTCAATTTAAACCTGAATGCGAATCAAAATCTCGTAA
ATGGGTAGTACCAGTTGCTGTAGTTGTATCTGTTGTTGGTTTTTCAGGTTTGGCAGTTGC
TGGTTTTATTTTATATAAAAAACAAAGTATTGCCATTAAGGTACAAATCCATAAATTAAA
AAGATTTAACCAAGATTAAATGTAATATTATT
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -