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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFO139
Library AF
(Link to library)
Clone ID AFO139
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15284-1|Contig-U15575-1
Original site URL
Representative seq. ID AFO139P
(Link to Original site)
Representative DNA sequence 
>AFO139 (AFO139Q) /CSM/AF/AFO1-B/AFO139Q.Seq.d/
CTGTTGGCCTACTGGTAATAATAATAATAATAATAATAATAACAATAATAATAATGGTAT
TAATAATAGTAATAATAAACAATTAATAATATGCAAGAGGTAGATTATTACAAATTATTG
ATACAAATAGTACAACTATTATTAAAAATATTAAATGTGAAGGATCAGGTTTAATGAAAG
ATATATTATTTTATGAGNGGTAATTTTAGTACCATGTAGTAATAGTGACCTATTATTATA
TTCAATAGATATTGAAAATAAAGATGATGATGGTGGTAGTGGTGGTGGTGGTAAAXXXXX
XXXXXAATNCTTGTTCTNAATACNAATGATATTGGTGAATGGCATNCAGTTACTTATATN
TCNTTAATTGNACCNTCNTCATCATCNTCATCATCATCATCATCATCTTTATCTGCTACT
TCCTCCTCATCCCCCNTAGTTGTTTGCGCAACNCAAAATGGTTGGGNATTCGTTTGGGAT
ATTAAAAGTGGTTCNAAAGTTTATTCNAAAAGAGTTCNTCTTGGTTCNATTGAAGGATTN
CGTTGGAATAAATTTTCNAATAAAGTTATCTCTTGNTCNAGTGATTGNTTAATTCATGNA
TATGCATGTAAATNATTAAAATATGNAAATNATAAAATTCTGNGCAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgnnnnnnnnnnnnnginnsnnkqliickr*iitny*yk*ynyy*ky*m*rirfner
yiil*XVILVPCSNSDLLLYSIDIENKDDDGGSGGGGK---

---XLVLNTNDIGEWHXVTYXSLIXPSSSSSSSSSSSLSATSSSSPXVVCATQNGWXFVW
DIKSGSKVYSKRVXLGSIEGXRWNKFSNKVISXSSDXLIHXYACKXLKYXNXKILXKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
llayw*********q***wy******tinnmqevdyyklliqivqlllkilnvkdqv**k
iyyfmxgnfstm****piiifnry*k*r**ww*wwww*---

---nxcsxyx*yw*maxsylyxxnxtxxiixiiiiiificyfllipxsclrnxkwlgirl
gy*kwfxslfxkssswfx*rixle*ifx*syllxx*lxnsxicm*xikixkx*nsxqkk

Frame B:
cwptgnnnnnnnnnnnnnginnsnnkqliickr*iitny*yk*ynyy*ky*m*rirfner
yiil*XVILVPCSNSDLLLYSIDIENKDDDGGSGGGGK---

---XLVLNTNDIGEWHXVTYXSLIXPSSSSSSSSSSSLSATSSSSPXVVCATQNGWXFVW
DIKSGSKVYSKRVXLGSIEGXRWNKFSNKVISXSSDXLIHXYACKXLKYXNXKILXKKK

Frame C:
vgllviiiiiiiitiiimvliiviinn**yargrllqiidtnsttiiknikcegsglmkd
ilfyex*f*yhvvivtyyyiq*ilkikmmmvvvvvvv---

---xlfxixmilvngxqllixx*lxxxhhxhhhhhhlylllpphpp*lfaqxkmvgxsfg
ilkvvxkfixkefxlvxlkdxvginfxiklslxxvix*fmxmhvnx*nmxxikfxakk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO139 (AFO139Q) /CSM/AF/AFO1-B/AFO139Q.Seq.d/                        371   e-102
SSK596 (SSK596Q) /CSM/SS/SSK5-D/SSK596Q.Seq.d/                         42   0.010
SHK759 (SHK759Q) /CSM/SH/SHK7-C/SHK759Q.Seq.d/                         42   0.010
SHK255 (SHK255Q) /CSM/SH/SHK2-C/SHK255Q.Seq.d/                         42   0.010
SHD252 (SHD252Q) /CSM/SH/SHD2-C/SHD252Q.Seq.d/                         42   0.010
SHC141 (SHC141Q) /CSM/SH/SHC1-B/SHC141Q.Seq.d/                         42   0.010
SHB207 (SHB207Q) /CSM/SH/SHB2-A/SHB207Q.Seq.d/                         42   0.010
SHA861 (SHA861Q) /CSM/SH/SHA8-C/SHA861Q.Seq.d/                         42   0.010
SHA326 (SHA326Q) /CSM/SH/SHA3-B/SHA326Q.Seq.d/                         42   0.010
CHS334 (CHS334Q) /CSM/CH/CHS3-B/CHS334Q.Seq.d/                         42   0.010
own update 2004. 8.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ397009|BZ397009.1 EINBS75TF EI_10_12_KB Entamoeba invadens genomic clone EINBS75, DNA sequence.    48  0.14  1
BZ397019|BZ397019.1 EINBS75TR EI_10_12_KB Entamoeba invadens genomic clone EINBS75, DNA sequence.    48  0.14  1
AL626784|AL626784.11 Mouse DNA sequence from clone RP23-392J14 on chromosome 4.    46  0.46  2
AL133474|AL133474.9 Human DNA sequence from clone RP1-239I6 on chromosome 6 Contains  STSs and GSSs.    46  0.54  1
AC123342|AC123342.4 Rattus norvegicus clone CH230-263N15, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.63  2
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.71  6
AC060775|AC060775.5 Homo sapiens chromosome 8, clone RP11-678D18, complete sequence.    44  1.6  2
D31785|D31785.1 Hansenula wingei mitochondrial DNA, complete sequence.    34  1.7  4
AX392733|AX392733.1 Sequence 23 from Patent WO0212526.            36  1.7  2
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    34  2.0  6
dna update 2003. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008207_3678(AP008207|pid:none) Oryza sativa (japonica cultivar...    34   4.1
(Q6PBD6) RecName: Full=WD repeat-containing protein 61;  &BC0597...    34   4.1
DQ132809_1(DQ132809|pid:none) Oryza sativa (japonica cultivar-gr...    34   4.1
AC153125_19(AC153125|pid:none) Medicago truncatula clone mth2-74...    33   5.3
AY654583_1(AY654583|pid:none) Lolium perenne FY protein (FY) mRN...    33   5.3
EU954724_1(EU954724|pid:none) Zea mays clone 1479275 WD-repeat p...    33   7.0
protein update 2009. 4.26
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AFO139 is cyt
5' end seq. ID AFO139F
5' end seq. 
>AFO139F.Seq
CTGTTGGCCTACTGGTAATAATAATAATAATAATAATAATAACAATAATAATAATGGTAT
TAATAATAGTAATAATAAACAATTAATAATATGCAAGAGGTAGATTATTACAAATTATTG
ATACAAATAGTACAACTATTATTAAAAATATTAAATGTGAAGGATCAGGTTTAATGAAAG
ATATATTATTTTATGAGNGGTAATTTTAGTACCATGTAGTAATAGTGACCTATTATTATA
TTCAATAGATATTGAAAATAAAGATGATGATGGTGGTAGTGGTGGTGGTGGTAAA-----
-----
Length of 5' end seq. 295
3' end seq. ID AFO139Z
3' end seq. 
>AFO139Z.Seq
----------AATNCTTGTTCTNAATACNAATGATATTGGTGAATGGCATNCAGTTACTT
ATATNTCNTTAATTGNACCNTCNTCATCATCNTCATCATCATCATCATCATCTTTATCTG
CTACTTCCTCCTCATCCCCCNTAGTTGTTTGCGCAACNCAAAATGGTTGGGNATTCGTTT
GGGATATTAAAAGTGGTTCNAAAGTTTATTCNAAAAGAGTTCNTCTTGGTTCNATTGAAG
GATTNCGTTGGAATAAATTTTCNAATAAAGTTATCTCTTGNTCNAGTGATTGNTTAATTC
ATGNATATGCATGTAAATNATTAAAATATGNAAATNATAAAATTCTGNGCAAAAAAAAA
Length of 3' end seq. 349
Connected seq. ID AFO139P
Connected seq. 
>AFO139P.Seq
CTGTTGGCCTACTGGTAATAATAATAATAATAATAATAATAACAATAATAATAATGGTAT
TAATAATAGTAATAATAAACAATTAATAATATGCAAGAGGTAGATTATTACAAATTATTG
ATACAAATAGTACAACTATTATTAAAAATATTAAATGTGAAGGATCAGGTTTAATGAAAG
ATATATTATTTTATGAGNGGTAATTTTAGTACCATGTAGTAATAGTGACCTATTATTATA
TTCAATAGATATTGAAAATAAAGATGATGATGGTGGTAGTGGTGGTGGTGGTAAA-----
-----AATNCTTGTTCTNAATACNAATGATATTGGTGAATGGCATNCAGTTACTTATATN
TCNTTAATTGNACCNTCNTCATCATCNTCATCATCATCATCATCATCTTTATCTGCTACT
TCCTCCTCATCCCCCNTAGTTGTTTGCGCAACNCAAAATGGTTGGGNATTCGTTTGGGAT
ATTAAAAGTGGTTCNAAAGTTTATTCNAAAAGAGTTCNTCTTGGTTCNATTGAAGGATTN
CGTTGGAATAAATTTTCNAATAAAGTTATCTCTTGNTCNAGTGATTGNTTAATTCATGNA
TATGCATGTAAATNATTAAAATATGNAAATNATAAAATTCTGNGCAAAAAAAAA
Length of connected seq. 644
Full length Seq ID -
Full length Seq. -
Length of full length seq. -