VHG877
Library VH
(Link to library)
Clone ID VHG877
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12828-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHG877 (VHG877Q) /CSM/VH/VHG8-D/VHG877Q.Seq.d/
XXXXXXXXXXTGCTTTAAAAGATTTGGTAGATAAGTATAAATATGAAAATTTTCANTCAT
CCAGTTGTACCTGTCCTTAANGAAACTCGTCATATAGTTAAAGAATTTAATATAATTTTT
GAAAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---l*kiw*ISINMKIFXHPVVPVLXETRHIVKEFNIIFEK


Translated Amino Acid sequence (All Frames)
Frame A:
---alkdlvdkykyenfxsssctcp*xnssys*ri*ynf*k


Frame B:
---l*kiw*ISINMKIFXHPVVPVLXETRHIVKEFNIIFEK


Frame C:
---fkrfgr*v*i*kfsxiqlylslxklvi*lknli*flk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG877 (VHG877Q) /CSM/VH/VHG8-D/VHG877Q.Seq.d/ 218 1e-56
CHI526 (CHI526Q) /CSM/CH/CHI5-B/CHI526Q.Seq.d/ 194 2e-49
AHH234 (AHH234Q) /CSM/AH/AHH2-B/AHH234Q.Seq.d/ 194 2e-49
VHB439 (VHB439Q) /CSM/VH/VHB4-B/VHB439Q.Seq.d/ 188 1e-47
SHF650 (SHF650Q) /CSM/SH/SHF6-C/SHF650Q.Seq.d/ 188 1e-47
SHF552 (SHF552Q) /CSM/SH/SHF5-C/SHF552Q.Seq.d/ 188 1e-47
SHA125 (SHA125Q) /CSM/SH/SHA1-B/SHA125Q.Seq.d/ 188 1e-47
CHS329 (CHS329Q) /CSM/CH/CHS3-B/CHS329Q.Seq.d/ 188 1e-47
CHQ334 (CHQ334Q) /CSM/CH/CHQ3-B/CHQ334Q.Seq.d/ 188 1e-47
VHI262 (VHI262Q) /CSM/VH/VHI2-C/VHI262Q.Seq.d/ 186 5e-47

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ440834) Dictyostelium discoideum cDNA clone:ddv44j20, 3' ... 218 3e-53 1
(BJ380769) Dictyostelium discoideum cDNA clone:ddc39c07, 3' ... 141 3e-44 2
(BJ351987) Dictyostelium discoideum cDNA clone:dda45c10, 3' ... 141 3e-44 2
(BJ439370) Dictyostelium discoideum cDNA clone:ddv40b07, 3' ... 139 1e-43 2
(BJ380223) Dictyostelium discoideum cDNA clone:ddc37o08, 3' ... 139 1e-43 2
(BJ406509) Dictyostelium discoideum cDNA clone:dds35c14, 3' ... 141 2e-42 2
(BJ437175) Dictyostelium discoideum cDNA clone:ddv33n10, 3' ... 141 2e-42 2
(BJ406523) Dictyostelium discoideum cDNA clone:dds35g13, 3' ... 141 2e-42 2
(BJ403152) Dictyostelium discoideum cDNA clone:dds24a07, 3' ... 141 2e-42 2
(BJ385234) Dictyostelium discoideum cDNA clone:ddc54d09, 3' ... 141 2e-42 2
dna update 2008.11. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000687_912(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 34 1.4

protein update 2009. 3.10
PSORT

psg: 0.84 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: plasma membrane
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for VHG877 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG877Z
3' end seq.
>VHG877Z.Seq
NNNNNNNNNNTGCTTTAAAAGATTTGGTAGATAAGTATAAATATGAAAATTTTCANTCAT
CCAGTTGTACCTGTCCTTAANGAAACTCGTCATATAGTTAAAGAATTTAATATAATTTTT
GAAAAG
Length of 3' end seq. 126
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -