VHG855
Library VH
(Link to library)
Clone ID VHG855
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11087-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHG855 (VHG855Q) /CSM/VH/VHG8-C/VHG855Q.Seq.d/
XXXXXXXXXXCCACAAACCAGTTCTTTCGGATTTGNAGGATTCAGTAGTGCTCCAGTTTC
AGCAACACCATCAGCAGCACCATCATTATTTGGTAGATTAGTTAGTGCTCCAGTTTCAGC
AACACCATCAGCAGTACCAACTGCCACTTCACAATTCGGTGGAACAACAAGTTTTAATAA
AATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCATTTGGTGCTTCCACAACACCAAG
TTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCTCAACAACACCATCATTTGGTGC
TATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAACAACAACAACAGCAACTCCTCA
TTCAAATACAGAATCATCACTATTTGGAAGCACACAAGCCAATATCACTTCATTGTTTGG
TGGCTCGTCTACTCCACAACCATCCACATTCTCATTTTCAACACCACAATCAAAATTTGA
AAATAATGATACCACTGATTATACTCCAACACCAACTGATAATATTACTCTTACTTCAAT
TTCAGCAATGCCACAATTCTCAAATAAATCTGTTGAAGAAATCAAACAGAACAAACAAAA
AAATAAATTTGTAAATCCAATAAATAAATAAAGNATAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---QTSSFGFXGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFGGTTSFNKI
ETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATTTTTATPHS
NTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFENNDTTDYTPTPTDNITLTSIS
AMPQFSNKSVEEIKQNKQKNKFVNPINK*xi


Translated Amino Acid sequence (All Frames)
Frame A:
---hkpvlsdlxdsvvlqfqqhhqqhhhylvd*lvlqfqqhhqqyqlplhnsveqqvlik
lklqlvplplfhlvlpqhqvpqdlgdsvvlqsqqhhhlvlsllpqlkkqqqqqqqqqlli
qiqnhhyleahkpislhclvarllhnhphshfqhhnqnlkimipliilqhqliillllqf
qqchnsqinllkksnrtnkkinl*iq*inkx*


Frame B:
---tnqffrixriq*cssfsntisstiiiw*is*cssfsntisstnchftirwnnkf**n
*nsnwypylffiwcfhntkflriwgir*csslnntiiwcypffps*knnsnnnnnsnssf
kyriitiwkhtsqyhfivwwlvysttihilifnttiki*k**yh*lysntn**yysyfnf
snatilk*ic*rnqteqtkk*icksnk*ikxk


Frame C:
---QTSSFGFXGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFGGTTSFNKI
ETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATTTTTATPHS
NTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFENNDTTDYTPTPTDNITLTSIS
AMPQFSNKSVEEIKQNKQKNKFVNPINK*xi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ347 (VHQ347Q) /CSM/VH/VHQ3-B/VHQ347Q.Seq.d/ 617 e-176
VHQ278 (VHQ278Q) /CSM/VH/VHQ2-D/VHQ278Q.Seq.d/ 617 e-176
VHP347 (VHP347Q) /CSM/VH/VHP3-B/VHP347Q.Seq.d/ 617 e-176
VHP189 (VHP189Q) /CSM/VH/VHP1-D/VHP189Q.Seq.d/ 617 e-176
VHO875 (VHO875Q) /CSM/VH/VHO8-D/VHO875Q.Seq.d/ 617 e-176
VHO647 (VHO647Q) /CSM/VH/VHO6-B/VHO647Q.Seq.d/ 617 e-176
VHO136 (VHO136Q) /CSM/VH/VHO1-B/VHO136Q.Seq.d/ 617 e-176
VHN573 (VHN573Q) /CSM/VH/VHN5-D/VHN573Q.Seq.d/ 617 e-176
VHM633 (VHM633Q) /CSM/VH/VHM6-B/VHM633Q.Seq.d/ 617 e-176
VHL565 (VHL565Q) /CSM/VH/VHL5-C/VHL565Q.Seq.d/ 617 e-176

own update 2002.12.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446804) Dictyostelium discoideum cDNA clone:ddv63k20, 3' ... 617 0.0 2
(BJ446662) Dictyostelium discoideum cDNA clone:ddv63n11, 3' ... 617 0.0 2
(BJ446035) Dictyostelium discoideum cDNA clone:ddv61n11, 3' ... 617 0.0 2
(BJ445840) Dictyostelium discoideum cDNA clone:ddv60f20, 3' ... 617 0.0 2
(BJ445720) Dictyostelium discoideum cDNA clone:ddv60m12, 3' ... 617 0.0 2
(BJ445391) Dictyostelium discoideum cDNA clone:ddv59g09, 3' ... 617 0.0 2
(BJ445189) Dictyostelium discoideum cDNA clone:ddv58a19, 3' ... 617 0.0 2
(BJ443104) Dictyostelium discoideum cDNA clone:ddv51m21, 3' ... 617 0.0 2
(BJ442339) Dictyostelium discoideum cDNA clone:ddv49f18, 3' ... 617 0.0 2
(BJ442233) Dictyostelium discoideum cDNA clone:ddv49b08, 3' ... 617 0.0 2
dna update 2008.11. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_44(AC116963|pid:none) Dictyostelium discoideum chromoso... 168 1e-40
EF598054_1(EF598054|pid:none) Arabidopsis thaliana ecotype CS679... 34 3.2
AY814858_1(AY814858|pid:none) Schistosoma japonicum SJCHGC05983 ... 34 3.2
EF598049_1(EF598049|pid:none) Arabidopsis thaliana ecotype CS671... 34 4.1
EF598042_1(EF598042|pid:none) Arabidopsis thaliana ecotype CS901... 34 4.1
AB114136_2(AB114136|pid:none) Hepatitis C virus replicon pSGR-JF... 33 9.2
FJ393024_1(FJ393024|pid:none) Recombinant Hepatitis C Virus SA13... 33 9.2
FJ230884_1(FJ230884|pid:none) Recombinant Hepatitis C virus QC69... 33 9.2
FJ230883_1(FJ230883|pid:none) Recombinant Hepatitis C virus HK6a... 33 9.2
EU204645_1(EU204645|pid:none) Recombinant Hepatitis C virus S52/... 33 9.2
protein update 2009. 3.10
PSORT

psg: 0.90 gvh: 0.64 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: extracellular, including cell wall
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHG855 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG855Z
3' end seq.
>VHG855Z.Seq
NNNNNNNNNNCCACAAACCAGTTCTTTCGGATTTGNAGGATTCAGTAGTGCTCCAGTTTC
AGCAACACCATCAGCAGCACCATCATTATTTGGTAGATTAGTTAGTGCTCCAGTTTCAGC
AACACCATCAGCAGTACCAACTGCCACTTCACAATTCGGTGGAACAACAAGTTTTAATAA
AATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCATTTGGTGCTTCCACAACACCAAG
TTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCTCAACAACACCATCATTTGGTGC
TATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAACAACAACAACAGCAACTCCTCA
TTCAAATACAGAATCATCACTATTTGGAAGCACACAAGCCAATATCACTTCATTGTTTGG
TGGCTCGTCTACTCCACAACCATCCACATTCTCATTTTCAACACCACAATCAAAATTTGA
AAATAATGATACCACTGATTATACTCCAACACCAACTGATAATATTACTCTTACTTCAAT
TTCAGCAATGCCACAATTCTCAAATAAATCTGTTGAAGAAATCAAACAGAACAAACAAAA
AAATAAATTTGTAAATCCAATAAATAAATAAAGNATAAG
Length of 3' end seq. 639
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -