NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG830
Library VH
(Link to library)
Clone ID VHG830
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15666-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG830 (VHG830Q) /CSM/VH/VHG8-B/VHG830Q.Seq.d/
AAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAA
AAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAA
TCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAA
ATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTC
CATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATG
GATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAG
ATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCA
TTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATG
AACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTC
AAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCAT
CATCATCATCATTATTTCAACAAAGCGTTCGTGGTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVLPSVGGASASNQSSSSSSLFQQSVRG---
Translated Amino Acid sequence (All Frames) 
Frame A:
ksvvqlltqhl**inkkggkkk*m*rkwilmiyqinpik*sieyhhfqvqlgyhhstlke
iykrlvihqnn*mi*lhqklhfqihwnqmyfkilklienmd*iqkf*qriylisihhhsq
mfnqyqqilmvi*rfnlrisf*iqfvtfkkrhqksfnpimnkhqfmigieikni*rrf*v
knilkfyqvlvvlalvinhhhhhhyfnkafv---


Frame B:
kvlfny*pniydk*ikkegkkneckgngf**fik*iqsnnq*niiifksnwviiiqh*kk
strdw*yiktie*fnfiknsifksigtkcisrf*n**kiwirsksfskefi*yqyiiihr
csistnry*wlfkgsi*eyhfeynl*hskkdikrvsipl*tnins*le*r*kifrgdfrs
kty*sftkcwwc*r**siiiiiiiistkrsw---


Frame C:
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVLPSVGGASASNQSSSSSSLFQQSVRG---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO154 (VHO154Q) /CSM/VH/VHO1-C/VHO154Q.Seq.d/                        993   0.0
VHN194 (VHN194Q) /CSM/VH/VHN1-D/VHN194Q.Seq.d/                        993   0.0
VHI142 (VHI142Q) /CSM/VH/VHI1-B/VHI142Q.Seq.d/                        993   0.0
VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/                        993   0.0
VHG830 (VHG830Q) /CSM/VH/VHG8-B/VHG830Q.Seq.d/                        993   0.0
VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/                        993   0.0
VFC542 (VFC542Q) /CSM/VF/VFC5-B/VFC542Q.Seq.d/                        993   0.0
VFB672 (VFB672Q) /CSM/VF/VFB6-C/VFB672Q.Seq.d/                        993   0.0
VFA565 (VFA565Q) /CSM/VF/VFA5-C/VFA565Q.Seq.d/                        993   0.0
SHL644 (SHL644Q) /CSM/SH/SHL6-B/SHL644Q.Seq.d/                        993   0.0
own update 2002.12.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427199) Dictyostelium discoideum cDNA clone:ddv61k14, 5' ...   749   0.0    3
(BJ426616) Dictyostelium discoideum cDNA clone:ddv59k13, 5' ...   749   0.0    4
(BJ426029) Dictyostelium discoideum cDNA clone:ddv57k23, 5' ...   749   0.0    3
(BJ422937) Dictyostelium discoideum cDNA clone:ddv47d14, 5' ...   749   0.0    3
(BJ422861) Dictyostelium discoideum cDNA clone:ddv47c11, 5' ...   749   0.0    4
(BJ422238) Dictyostelium discoideum cDNA clone:ddv45e12, 5' ...   749   0.0    4
(BJ421964) Dictyostelium discoideum cDNA clone:ddv44l08, 5' ...   749   0.0    4
(BJ420589) Dictyostelium discoideum cDNA clone:ddv39d19, 5' ...   749   0.0    3
(BJ420508) Dictyostelium discoideum cDNA clone:ddv39d17, 5' ...   749   0.0    3
(BJ419190) Dictyostelium discoideum cDNA clone:ddv35g08, 5' ...   749   0.0    4
dna update 2008.11. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    47   5e-04
(A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   8e-04
D42085_1(D42085|pid:none) Homo sapiens KIAA0095 mRNA, partial cds.     46   8e-04
BC034346_1(BC034346|pid:none) Homo sapiens nucleoporin 93kDa, mR...    46   8e-04
(Q8BJ71) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   8e-04
(Q66HC5) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    46   8e-04
(Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa...    45   0.002
CR859933_1(CR859933|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1...    45   0.002
CR859615_1(CR859615|pid:none) Pongo abelii mRNA; cDNA DKFZp468J0...    45   0.002
AK292262_1(AK292262|pid:none) Homo sapiens cDNA FLJ78686 complet...    44   0.003
protein update 2009. 7.12
PSORT 

 psg: 0.57  gvh: 0.44  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHG830 is cyt
5' end seq. ID VHG830F
5' end seq. 
>VHG830F.Seq
AAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAA
AAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAA
TCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAA
ATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTC
CATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATG
GATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAG
ATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCA
TTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATG
AACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTC
AAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCAT
CATCATCATCATTATTTCAACAAAGCGTTCGTGGTGNNNNNNNNNN
Length of 5' end seq. 646
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -