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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG689
Library VH
(Link to library)
Clone ID VHG689
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16319-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG689 (VHG689Q) /CSM/VH/VHG6-D/VHG689Q.Seq.d/
XXXXXXXXXXTCCNATTCAATTCGTTTCAGATTAGGTTGAATGTAATTCGTACTTACTCA
TGTTAAAGAAGCTGATCCAGCATNACCATATTNACNAAATACTATCAAATACATTCAATA
CTCAAAATTATAAAGGTATTTCAATTTAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---piqfvsd*VECNSYLLMLKKLIQHXHIXXILSNTFNTQNYKGISI*
Translated Amino Acid sequence (All Frames) 
Frame A:
---piqfvsd*VECNSYLLMLKKLIQHXHIXXILSNTFNTQNYKGISI*


Frame B:
---xfnsfqirlnvirtysc*rs*ssxtixtkyyqihsilkiikvfqf


Frame C:
---xsirfrlg*m*fvlthvkeadpaxpyxxntikyiqyskl*ryfnl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG689 (VHG689Q) /CSM/VH/VHG6-D/VHG689Q.Seq.d/                        252   1e-66
VHK626 (VHK626Q) /CSM/VH/VHK6-B/VHK626Q.Seq.d/                        216   7e-56
VHF650 (VHF650Q) /CSM/VH/VHF6-C/VHF650Q.Seq.d/                        202   1e-51
VHO843 (VHO843Q) /CSM/VH/VHO8-B/VHO843Q.Seq.d/                        198   2e-50
VHQ238 (VHQ238Q) /CSM/VH/VHQ2-B/VHQ238Q.Seq.d/                        196   6e-50
VHK662 (VHK662Q) /CSM/VH/VHK6-C/VHK662Q.Seq.d/                        196   6e-50
VHJ448 (VHJ448Q) /CSM/VH/VHJ4-B/VHJ448Q.Seq.d/                        196   6e-50
VHI863 (VHI863Q) /CSM/VH/VHI8-C/VHI863Q.Seq.d/                        196   6e-50
VHI583 (VHI583Q) /CSM/VH/VHI5-D/VHI583Q.Seq.d/                        196   6e-50
VHG155 (VHG155Q) /CSM/VH/VHG1-C/VHG155Q.Seq.d/                        196   6e-50
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440790) Dictyostelium discoideum cDNA clone:ddv44a24, 3' ...   252   3e-63  1
(BJ443218) Dictyostelium discoideum cDNA clone:ddv52c08, 3' ...   111   4e-50  3
(BJ440058) Dictyostelium discoideum cDNA clone:ddv42c14, 3' ...   167   1e-46  2
(BJ445692) Dictyostelium discoideum cDNA clone:ddv60f12, 3' ...   111   9e-45  3
(BJ352487) Dictyostelium discoideum cDNA clone:dda46m21, 3' ...   125   5e-43  2
(BJ442084) Dictyostelium discoideum cDNA clone:ddv48e21, 3' ...   111   7e-42  3
(BJ443345) Dictyostelium discoideum cDNA clone:ddv52k16, 3' ...   111   7e-42  3
(BJ353199) Dictyostelium discoideum cDNA clone:dda49f11, 3' ...   111   7e-42  3
(BJ348056) Dictyostelium discoideum cDNA clone:dda32e05, 3' ...   111   7e-42  3
(BJ442047) Dictyostelium discoideum cDNA clone:ddv48n16, 3' ...   111   7e-42  3
dna update 2008.11. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C24) RecName: Full=Vacuolar sorting protein 35;                    41   0.012
protein update 2009. 3.10
PSORT 

 psg: 0.65  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHG689 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG689Z
3' end seq. 
>VHG689Z.Seq
NNNNNNNNNNTCCNATTCAATTCGTTTCAGATTAGGTTGAATGTAATTCGTACTTACTCA
TGTTAAAGAAGCTGATCCAGCATNACCATATTNACNAAATACTATCAAATACATTCAATA
CTCAAAATTATAAAGGTATTTCAATTTAA
Length of 3' end seq. 149
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -