NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG688
Library VH
(Link to library)
Clone ID VHG688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16315-1
Original site URL
Representative seq. ID VHG688P
(Link to Original site)
Representative DNA sequence 
>VHG688 (VHG688Q) /CSM/VH/VHG6-D/VHG688Q.Seq.d/
GAAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTAT
AAGCACTCCATATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATT
ATTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAAATAA
CTATAAAAATTGTAAAATAGATTAACAAACGCAAANGGAATATTTTAAAAATTAACCTCT
TTTTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTT
GGCGTAATTTTGGATTTCAACCAATATTACATATTGAAAGTATTTTGGATAGAGATTTCT
TCACATTANAAGACTTATTCGATGAANATGAACTCTTGCAAGAATGTAAAACACAAAACA
AAAGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCA
CAAAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCAT
CAGAAATCTTATGTNTGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTAT
ATTTACAACAATTATATGAATTTTTAAATXXXXXXXXXXCTCCAAAATGGGGAGTATNTT
GTTACTGAATCGTTAGAACCTGTTTTAAATATTGAAAATGAACCATTAGGTGAATTTAAA
CCAAGTTTAATGACTGCACCAGAAAGTGCTGAAGAAGATGACGATCAATATGATAATGAT
GATAATGGTTATGATAACTACGATAGTGTTGGCGATTATGTTAGTGCCGACCAATATCAA
GATCAAATGGATTATAGCGATGAAGATGATTATGAAGGTGGTTAAAAACCTATCAATTAT
ATTGAAGAGGAAGATGATGAAGAGGAAGATGATGACATACGATTTCAACAACAACAACAA
CAACAACAACAATTAAATCACCACGACAATCAAGATGAATTAAATGAACAACCACAACAA
CCACAACCACAACAAGACGACAAAACTACTCAAGACACTGAAGCAGTTGTAGAAACTCCA
AAAGAATCATCTGTTGACCAAGAATCAACAGAAGCAAAAACTNAATCTTCATAAACTTTA
AAATAATACCAATAACAACAACAAAATCACC
sequence update 2002.10.25
Translated Amino Acid sequence 
kkllsqklyyifiyfntfv*alhiyiyiihnhicn*cyyyyyrnsysifgilklk*kkit
ikivk*inkrkxnilkinlffiqi**ithi*ANMYNMSFWRNFGFQPILHIESILDRDFF
TLXDLFDEXELLQECKTQNKRLIEFLIKPESLNGMFEFITKEAPEEAERKRKENYPFLAS
EILCXDIQPLIEAVYRDDLYLQQLYEFLN---

---LQNGEYXVTESLEPVLNIENEPLGEFKPSLMTAPESAEEDDDQYDNDDNGYDNYDSV
GDYVSADQYQDQMDYSDEDDYEGG*kpinyieeeddeeedddirfqqqqqqqqqlnhhdn
qdelneqpqqpqpqqddkttqdteavvetpkessvdqesteaktxss*tlk*yq*qqqnh
Translated Amino Acid sequence (All Frames) 
Frame A:
ekncyhksyiiflfisiplykhsiyiyi*yiiifvisaiiitieiviqflgf*n*nkkk*
l*kl*nrltnaxgif*kltsflfkynkspiyrqicit*vfgvildfnqyyilkvfwieis
shxktysmxmnscknvkhktkd*snf*lsqnh*meclnlsqkkpqkrlkerekktthf*h
qksyvwifnlslrqctemiyiynnymnf*---

---LQNGEYXVTESLEPVLNIENEPLGEFKPSLMTAPESAEEDDDQYDNDDNGYDNYDSV
GDYVSADQYQDQMDYSDEDDYEGG*kpinyieeeddeeedddirfqqqqqqqqqlnhhdn
qdelneqpqqpqpqqddkttqdteavvetpkessvdqesteaktxss*tlk*yq*qqqnh

Frame B:
kktvitkvilyfylfqylcistpyiyiynt*syl*lvlllllsk*lfnfwdfkikikknn
yknckid*qtqxeyfkn*plfysniinhpyigkyv*hefla*fwistnity*kyfg*rfl
hixrlir*x*tlarm*ntkqkinrifn*ariikwnv*iyhkrsprrg*kkekrklpifsi
rnlmxgystsh*gsvqr*fifttii*ifk---

---skmgsxlllnr*nlf*ilkmnh*vnlnqv**lhqkvlkkmtinmimmimvmittivl
aimlvptnikikwiiamkmimkvvknlsiilkrkmmkrkmmtydfnnnnnnnnn*ittti
kmn*mnnhnnhnhnkttkllktlkql*klqknhlltknqqkqklnlhkl*nntnnnnkit

Frame C:
kkllsqklyyifiyfntfv*alhiyiyiihnhicn*cyyyyyrnsysifgilklk*kkit
ikivk*inkrkxnilkinlffiqi**ithi*ANMYNMSFWRNFGFQPILHIESILDRDFF
TLXDLFDEXELLQECKTQNKRLIEFLIKPESLNGMFEFITKEAPEEAERKRKENYPFLAS
EILCXDIQPLIEAVYRDDLYLQQLYEFLN---

---pkwgvxcy*ivrtcfky*k*tir*i*tkfndctrkc*rr*rsi*****wl**lr*cw
rlc*crpisrsngl*r*r*l*rwlktyqly*rgr**rgr**htisttttttttiksprqs
r*ik*tttttttttrrqnysrh*sscrnskriic*prinrsknxifinfkiipitttks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG688 (VHG688Q) /CSM/VH/VHG6-D/VHG688Q.Seq.d/                       1394   0.0
VHQ386 (VHQ386Q) /CSM/VH/VHQ3-D/VHQ386Q.Seq.d/                        825   0.0
VHQ258 (VHQ258Q) /CSM/VH/VHQ2-C/VHQ258Q.Seq.d/                        825   0.0
VHP592 (VHP592Q) /CSM/VH/VHP5-D/VHP592Q.Seq.d/                        825   0.0
VHP518 (VHP518Q) /CSM/VH/VHP5-A/VHP518Q.Seq.d/                        825   0.0
VHP193 (VHP193Q) /CSM/VH/VHP1-D/VHP193Q.Seq.d/                        825   0.0
VHM311 (VHM311Q) /CSM/VH/VHM3-A/VHM311Q.Seq.d/                        825   0.0
VHJ224 (VHJ224Q) /CSM/VH/VHJ2-A/VHJ224Q.Seq.d/                        825   0.0
VHH587 (VHH587Q) /CSM/VH/VHH5-D/VHH587Q.Seq.d/                        825   0.0
VHA494 (VHA494Q) /CSM/VH/VHA4-D/VHA494Q.Seq.d/                        825   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440859) Dictyostelium discoideum cDNA clone:ddv44o22, 3' ...   601   0.0    2
(BJ340763) Dictyostelium discoideum cDNA clone:dda3a22, 3' e...   561   0.0    3
(BJ402768) Dictyostelium discoideum cDNA clone:dds18a07, 3' ...   561   0.0    3
(BJ431057) Dictyostelium discoideum cDNA clone:ddv9a20, 3' e...   561   0.0    3
(BJ342829) Dictyostelium discoideum cDNA clone:dda15c04, 3' ...   561   0.0    3
(BJ441506) Dictyostelium discoideum cDNA clone:ddv46m21, 3' ...   561   0.0    3
(BJ445200) Dictyostelium discoideum cDNA clone:ddv58c19, 3' ...   561   0.0    3
(BJ385930) Dictyostelium discoideum cDNA clone:ddc56i18, 3' ...   561   0.0    3
(BJ438153) Dictyostelium discoideum cDNA clone:ddv36d17, 3' ...   561   0.0    3
(BJ382816) Dictyostelium discoideum cDNA clone:ddc45p20, 3' ...   561   0.0    3
dna update 2008.11. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC121957_1(BC121957|pid:none) Xenopus tropicalis hypothetical pr...    55   4e-06
(Q6NRI0) RecName: Full=Serine/threonine-protein phosphatase 6 re...    55   5e-06
CR749815_1(CR749815|pid:none) Homo sapiens mRNA; cDNA DKFZp781E1...    53   2e-05
(Q922D4) RecName: Full=Serine/threonine-protein phosphatase 6 re...    53   2e-05
AF264780_1(AF264780|pid:none) Homo sapiens sporulation-induced t...    53   2e-05
AK018652_1(AK018652|pid:none) Mus musculus adult male cecum cDNA...    53   2e-05
BC107599_1(BC107599|pid:none) Homo sapiens SAPS domain family, m...    53   2e-05
CR933658_1(CR933658|pid:none) Homo sapiens mRNA; cDNA DKFZp781E2...    53   2e-05
AB385481_1(AB385481|pid:none) Synthetic construct DNA, clone: pF...    53   2e-05
AB371897_1(AB371897|pid:none) Equus caballus SAPS3 mRNA for spor...    52   3e-05
protein update 2009. 7.12
PSORT 

 psg: 0.83  gvh: 0.41  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VHG688 is cyt
5' end seq. ID VHG688F
5' end seq. 
>VHG688F.Seq
GAAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTAT
AAGCACTCCATATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATT
ATTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAAATAA
CTATAAAAATTGTAAAATAGATTAACAAACGCAAANGGAATATTTTAAAAATTAACCTCT
TTTTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTT
GGCGTAATTTTGGATTTCAACCAATATTACATATTGAAAGTATTTTGGATAGAGATTTCT
TCACATTANAAGACTTATTCGATGAANATGAACTCTTGCAAGAATGTAAAACACAAAACA
AAAGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCA
CAAAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCAT
CAGAAATCTTATGTNTGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTAT
ATTTACAACAATTATATGAATTTTTAAATNNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID VHG688Z
3' end seq. 
>VHG688Z.Seq
NNNNNNNNNNCTCCAAAATGGGGAGTATNTTGTTACTGAATCGTTAGAACCTGTTTTAAA
TATTGAAAATGAACCATTAGGTGAATTTAAACCAAGTTTAATGACTGCACCAGAAAGTGC
TGAAGAAGATGACGATCAATATGATAATGATGATAATGGTTATGATAACTACGATAGTGT
TGGCGATTATGTTAGTGCCGACCAATATCAAGATCAAATGGATTATAGCGATGAAGATGA
TTATGAAGGTGGTTAAAAACCTATCAATTATATTGAAGAGGAAGATGATGAAGAGGAAGA
TGATGACATACGATTTCAACAACAACAACAACAACAACAACAATTAAATCACCACGACAA
TCAAGATGAATTAAATGAACAACCACAACAACCACAACCACAACAAGACGACAAAACTAC
TCAAGACACTGAAGCAGTTGTAGAAACTCCAAAAGAATCATCTGTTGACCAAGAATCAAC
AGAAGCAAAAACTNAATCTTCATAAACTTTAAAATAATACCAATAACAACAACAAAATCA
CC
Length of 3' end seq. 542
Connected seq. ID VHG688P
Connected seq. 
>VHG688P.Seq
GAAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTAT
AAGCACTCCATATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATT
ATTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAAATAA
CTATAAAAATTGTAAAATAGATTAACAAACGCAAANGGAATATTTTAAAAATTAACCTCT
TTTTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTT
GGCGTAATTTTGGATTTCAACCAATATTACATATTGAAAGTATTTTGGATAGAGATTTCT
TCACATTANAAGACTTATTCGATGAANATGAACTCTTGCAAGAATGTAAAACACAAAACA
AAAGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCA
CAAAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCAT
CAGAAATCTTATGTNTGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTAT
ATTTACAACAATTATATGAATTTTTAAAT----------CTCCAAAATGGGGAGTATNTT
GTTACTGAATCGTTAGAACCTGTTTTAAATATTGAAAATGAACCATTAGGTGAATTTAAA
CCAAGTTTAATGACTGCACCAGAAAGTGCTGAAGAAGATGACGATCAATATGATAATGAT
GATAATGGTTATGATAACTACGATAGTGTTGGCGATTATGTTAGTGCCGACCAATATCAA
GATCAAATGGATTATAGCGATGAAGATGATTATGAAGGTGGTTAAAAACCTATCAATTAT
ATTGAAGAGGAAGATGATGAAGAGGAAGATGATGACATACGATTTCAACAACAACAACAA
CAACAACAACAATTAAATCACCACGACAATCAAGATGAATTAAATGAACAACCACAACAA
CCACAACCACAACAAGACGACAAAACTACTCAAGACACTGAAGCAGTTGTAGAAACTCCA
AAAGAATCATCTGTTGACCAAGAATCAACAGAAGCAAAAACTNAATCTTCATAAACTTTA
AAATAATACCAATAACAACAACAAAATCACC
Length of connected seq. 1161
Full length Seq ID -
Full length Seq. -
Length of full length seq. -