AFO104
Library AF
(Link to library)
Clone ID AFO104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID AFO104F
(Link to Original site)
Representative DNA sequence
>AFO104 (AFO104Q) /CSM/AF/AFO1-A/AFO104Q.Seq.d/
CATACTAATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAAT
TTATAATAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAA
GCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATC
ATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGC
ACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATT
GTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACC
ACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTC
AGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGG
TTGTACTGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAG
TGTTCAACAAATTAAAGAAATGAATGAAAGATATAATATTAAAGTACCATTAGTATTAAT
GAATTCATTTAATACTCATCAAGAAACTGGTAAAATCATTCAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ili*fis*kfifiksivtliynnqivvlf*yff**IKMMKPDLNSPLPQSPQLQSFGSRS
SDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPP
PADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLS
VQQIKEMNERYNIKVPLVLMNSFNTHQETGKIIQ---


Translated Amino Acid sequence (All Frames)
Frame A:
htnlihiikiyfykiysntnl**sncglilifflin*ddearfk*sittitttsiiwk*i
irscnrgfifeeigsnltnctk*nske*ifkqrntiyqqivypflke*kesnrlg*nqst
ts*ygfkl*rftsnh*tknfrtrfkigcfeikwrfrynnglywskecy*s*k*knflrfk
cstn*rne*ki*y*stisinefi*yssrnw*nhsk---


Frame B:
ili*fis*kfifiksivtliynnqivvlf*yff**IKMMKPDLNSPLPQSPQLQSFGSRS
SDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPP
PADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLS
VQQIKEMNERYNIKVPLVLMNSFNTHQETGKIIQ---


Frame C:
y*fnsyhknlfl*nl**h*fiiiklwsyfniffnklr**sqi*ivhyhnhhnfnhlevdh
qilqpriyf*rnwkqshklhqmkq*rmnf*tkkyhlstnclpvs*rierk*sigiksihh
qliwf*tikiyqqslnkelqnslqnwlf*n*mev*vqqwvvlvqrvllklevkkls*i*v
fnklkk*mkdiilkyh*y**ihlilikklvksfk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO104 (AFO104Q) /CSM/AF/AFO1-A/AFO104Q.Seq.d/ 1233 0.0
SFI784 (SFI784Q) /CSM/SF/SFI7-D/SFI784Q.Seq.d/ 1221 0.0
CFA695 (CFA695Q) /CSM/CF/CFA6-D/CFA695Q.Seq.d/ 1205 0.0
AFH262 (AFH262Q) /CSM/AF/AFH2-C/AFH262Q.Seq.d/ 1203 0.0
CFD680 (CFD680Q) /CSM/CF/CFD6-D/CFD680Q.Seq.d/ 1199 0.0
CFD345 (CFD345Q) /CSM/CF/CFD3-B/CFD345Q.Seq.d/ 1195 0.0
AFJ550 (AFJ550Q) /CSM/AF/AFJ5-C/AFJ550Q.Seq.d/ 1193 0.0
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/ 1183 0.0
SFF241 (SFF241Q) /CSM/SF/SFF2-B/SFF241Q.Seq.d/ 1174 0.0
AFD135 (AFD135Q) /CSM/AF/AFD1-B/AFD135Q.Seq.d/ 1154 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 1080 0.0 2
BQ060478|BQ060478.1 Bvstrg3ARGF7 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UDP-glucose pyrophosphorylase, mRNA sequence. 70 4e-09 2
L28006|L28006.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds. 72 9e-09 1
BQ489736|BQ489736.1 69-E9234-006-008-J18-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone J-18-8, mRNA sequence. 62 6e-07 2
BQ490192|BQ490192.1 49-E9435-006-010-A14-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone A-14-10, mRNA sequence. 62 6e-07 2
BQ489864|BQ489864.1 39-E9426-006-009-M10-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone M-10-9, mRNA sequence. 62 8e-07 2
BI096068|BI096068.1 PIP2ER_C07 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UTP-glucose-1-phosphate uridyltransferase, mRNA sequence. 62 8e-07 2
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728. 52 2e-05 2
BQ087635|BQ087635.1 Cri_9_L03_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri_9_L03 5', mRNA sequence. 60 4e-05 1
CD479915|CD479915.1 eca01-74ms2-h11 Eca01 Eschscholzia californica cDNA clone eca01-74ms2-h11 5', mRNA sequence. 56 6e-04 1
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 351 9e-96
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo... 145 1e-33
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py... 142 1e-32
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 141 1e-32
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 141 2e-32
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet... 140 4e-32
BC060013_1(BC060013|pid:none) Xenopus laevis hypothetical protei... 140 4e-32
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp... 139 5e-32
AC114748_1(AC114748|pid:none) Homo sapiens BAC clone RP11-164A18... 139 5e-32
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 139 5e-32
protein update 2009. 4.26
PSORT

psg: 0.76 gvh: 0.42 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFO104 is nuc

5' end seq. ID AFO104F
5' end seq.
>AFO104F.Seq
CATACTAATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAAT
TTATAATAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAA
GCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATC
ATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGC
ACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATT
GTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACC
ACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTC
AGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGG
TTGTACTGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAG
TGTTCAACAAATTAAAGAAATGAATGAAAGATATAATATTAAAGTACCATTAGTATTAAT
GAATTCATTTAATACTCATCAAGAAACTGGTAAAATCATTCAAAAA----------
Length of 5' end seq. 646
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -