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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG667
Library VH
(Link to library)
Clone ID VHG667
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12300-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG667 (VHG667Q) /CSM/VH/VHG6-C/VHG667Q.Seq.d/
XXXXXXXXXXAACAATCTAGAAAACAACGTTTATTTGAAATTCAAGAATCAGAGAATAGA
TTCAAACAAGATAGAGAACAATTAATCAATGATCATAAACAACAAGAGAAATTAGAACAA
CAAAAGAGAGATCTCGAAGAGACTAGAATCATTGAACAATTGAAACAAGAGTCGGAACAA
CGTAAAAAACAATATGAAGATCATTTGAAAGAAAGAGAATCAGAGAGAGAGAAAGAGGTT
CAACAATTATTATTAAAACAAAAAGAAGCTGAACAATTAATTGAACAACAAAAACAAGAT
CAACAAAAGCTCAAACAAGAGAGAGAACTTGAAATTCGTAAACAACAACAATTGGAACAC
CAATTGGAAGAGGAGAGAAAACAAGAACAAAAGAAAAAGAAAGANNTGGATGATCAAGAA
TGGAAGAGAAAGGA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---QSRKQRLFEIQESENRFKQDREQLINDHKQQEKLEQQKRDLEETRIIEQLKQESEQR
KKQYEDHLKERESEREKEVQQLLLKQKEAEQLIEQQKQDQQKLKQERELEIRKQQQLEHQ
LEEERKQEQKKKKXXDDQEWKRK
Translated Amino Acid sequence (All Frames) 
Frame A:
---ti*kttfi*nsrire*iqtr*rtinq*s*ttreirttkersrrd*nh*tietrvgtt
*kti*rsferkrirerergstiiiktkrs*tin*ttktrstkaqtrert*ns*tttigtp
igrgektrtkekerxg*srmeekg


Frame B:
---QSRKQRLFEIQESENRFKQDREQLINDHKQQEKLEQQKRDLEETRIIEQLKQESEQR
KKQYEDHLKERESEREKEVQQLLLKQKEAEQLIEQQKQDQQKLKQERELEIRKQQQLEHQ
LEEERKQEQKKKKXXDDQEWKRK


Frame C:
---nlennvylkfknqridsnkienn*smiinnkrn*nnkreiskrleslnn*nksrnnv
knnmkii*kkenqrerkrfnnyy*nkkklnn*lnnknkinkssnkrenlkfvnnnnwntn
wkrrenknkrkrkxwmikngrer
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO368 (VHO368Q) /CSM/VH/VHO3-C/VHO368Q.Seq.d/                        389   e-107
VHG667 (VHG667Q) /CSM/VH/VHG6-C/VHG667Q.Seq.d/                        389   e-107
VHG488 (VHG488Q) /CSM/VH/VHG4-D/VHG488Q.Seq.d/                        389   e-107
VHF146 (VHF146Q) /CSM/VH/VHF1-B/VHF146Q.Seq.d/                        389   e-107
VHD202 (VHD202Q) /CSM/VH/VHD2-A/VHD202Q.Seq.d/                        389   e-107
VHC876 (VHC876Q) /CSM/VH/VHC8-D/VHC876Q.Seq.d/                        389   e-107
VHM360 (VHM360Q) /CSM/VH/VHM3-C/VHM360Q.Seq.d/                        359   2e-98
VHA330 (VHA330Q) /CSM/VH/VHA3-B/VHA330Q.Seq.d/                        311   5e-84
VHJ690 (VHJ690Q) /CSM/VH/VHJ6-D/VHJ690Q.Seq.d/                        190   1e-47
VFD839 (VFD839Q) /CSM/VF/VFD8-B/VFD839Q.Seq.d/                        153   3e-36
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440727) Dictyostelium discoideum cDNA clone:ddv44e18, 3' ...   389   e-104  1
(BJ426608) Dictyostelium discoideum cDNA clone:ddv59h17, 5' ...   389   e-104  1
(BJ421826) Dictyostelium discoideum cDNA clone:ddv43p22, 5' ...   389   e-104  1
(BJ421006) Dictyostelium discoideum cDNA clone:ddv41k11, 5' ...   389   e-104  1
(BJ419728) Dictyostelium discoideum cDNA clone:ddv37c02, 5' ...   389   e-104  1
(BJ419674) Dictyostelium discoideum cDNA clone:ddv36h20, 5' ...   389   e-104  1
(BJ425397) Dictyostelium discoideum cDNA clone:ddv55h15, 5' ...   359   5e-95  1
(BJ418024) Dictyostelium discoideum cDNA clone:ddv31l07, 5' ...   307   2e-79  1
(BJ423900) Dictyostelium discoideum cDNA clone:ddv50c24, 5' ...   190   3e-44  1
(BJ412432) Dictyostelium discoideum cDNA clone:ddv8n10, 5' e...   153   6e-33  1
dna update 2008.11. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC091989_1(BC091989|pid:none) Danio rerio similar to GTPase, IMA...    48   9e-05
AY042084_3(AY042084|pid:none) Plasmodium falciparum erythrocyte ...    46   4e-04
(A4II09) RecName: Full=Eukaryotic translation initiation factor ...    45   0.001
AB209957_1(AB209957|pid:none) Sus scrofa MYO5A mRNA for myosin V...    45   0.001
AB290180_1(AB290180|pid:none) Homo sapiens mRNA for MYO5A varian...    44   0.002
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    44   0.002
B59254(B59254) mysoin heavy chain 12, splice form2 - human  &Y07...    44   0.002
AY722933_5(AY722933|pid:none) Borrelia garinii PBi variable plas...    43   0.003
A45973(A45973) trichohyalin - human  &CS673550_1(CS673550|pid:no...    43   0.003
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    43   0.003
protein update 2009. 7.12
PSORT 

 psg: 0.44  gvh: 0.20  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHG667 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG667Z
3' end seq. 
>VHG667Z.Seq
NNNNNNNNNNAACAATCTAGAAAACAACGTTTATTTGAAATTCAAGAATCAGAGAATAGA
TTCAAACAAGATAGAGAACAATTAATCAATGATCATAAACAACAAGAGAAATTAGAACAA
CAAAAGAGAGATCTCGAAGAGACTAGAATCATTGAACAATTGAAACAAGAGTCGGAACAA
CGTAAAAAACAATATGAAGATCATTTGAAAGAAAGAGAATCAGAGAGAGAGAAAGAGGTT
CAACAATTATTATTAAAACAAAAAGAAGCTGAACAATTAATTGAACAACAAAAACAAGAT
CAACAAAAGCTCAAACAAGAGAGAGAACTTGAAATTCGTAAACAACAACAATTGGAACAC
CAATTGGAAGAGGAGAGAAAACAAGAACAAAAGAAAAAGAAAGANNTGGATGATCAAGAA
TGGAAGAGAAAGGA
Length of 3' end seq. 434
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -