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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG624
Library VH
(Link to library)
Clone ID VHG624
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11536-1
Original site URL
Representative seq. ID VHG624P
(Link to Original site)
Representative DNA sequence 
>VHG624 (VHG624Q) /CSM/VH/VHG6-A/VHG624Q.Seq.d/
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAANAGTTTCAAATTTAACTNTATTA
TCTANTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGNGGNATTANAATTAGTTGTGTATTTATACATGTAATTNCAAATTTAGATANN
ANAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATNTAAAATTTATANTGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATNGATAGTGNTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTNCAATTGCACCATNTTATTTATNTGATCTTAGTXXX
XXXXXXXATGATTATATGACATTACNAATTGGNACATACTCATTTGAAGGTAAATTTATA
AAAAAAGCAATTATCAATGGCAATAGAATTGTAACAATAAATAATANATTATTAAATGAA
AATCAACTAAATAGTAATTCAACTATAANTAAAGAAAAAGATTCATCAAATCAACTTTCA
TCCTTTATCTCAATTGAAATACCTCATTATGATTCAACATGTATTATTAGATCCAAGTTT
TTCAGTTTTATTAGATTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTACTTC
AAAAAAATCCTCAAAACTTACTACCGCTCAAATAANTGCTATTGTTATGGTTTCTGTAGT
TTTTGTAATAATTCTAGCTCTCTTTATAATCGTTAAATTTTCAANATCTGATAAATTTTT
ATCTATAAGAATTTTCTATTATAAATTATTTNAACGATTTAAGANAAAGTATTAAATTTA
TTTTTTAAAACAATAATATTAATTGTAAAATAAAGTTTAAAAAATAGTTTTTATTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
t*FFIDCFEFPPXVSNLTXLSXNSVTLNSNQTIGWEIVIDSGGGIXISCVFIHVIXNLDX
XGYTFEFYPNSTSWETTIGIALSPETTPSQIXKIYXATIIDERGIRSDHXDSXKVDEIFS
NQSPIYPIXIAPXYLXDLS---

---DYMTLXIGTYSFEGKFIKKAIINGNRIVTINNXLLNENQLNSNSTIXKEKDSSNQLS
SFISIEIPHYDSTCIIRSKFFSFIRFK*ii*kl*kfnlyfkkilktyyrsnxcycygfcs
fcnnssslynr*ifxi**ifiyknfll*iixti*xkvlnlffktiilivk*slknsfy*
Translated Amino Acid sequence (All Frames) 
Frame A:
t*FFIDCFEFPPXVSNLTXLSXNSVTLNSNQTIGWEIVIDSGGGIXISCVFIHVIXNLDX
XGYTFEFYPNSTSWETTIGIALSPETTPSQIXKIYXATIIDERGIRSDHXDSXKVDEIFS
NQSPIYPIXIAPXYLXDLS---

---mii*hyxlxhthlkvnl*kkqlsmaiel*q*iixy*mkin*iviql*xkkkihqinf
hplsqlkylimiqhvlldpsfsvlldsnesyknsensictskkssklttaqixaivmvsv
vfviilalfiivkfsxsdkflsirifyyklfxrfkxky*iyflkq*y*l*nkv*kivfik

Frame B:
lnfl*ivlnfhqxfqi*lyylxialh*tliklldgkl*livvxxlxlvvylym*xqi*ix
xdthlnsiqtlphgkpqlellyhqkqhhhkyxkfixqllltkeeldrtixivxklmkffq
ikvqfiqxqlhhxiyxil---

---*lyditnwxili*r*iykksnyqwq*ncnnk*xiik*kstk**fnyx*rkrfikstf
ilyln*ntsl*fnmyy*iqvfqfy*iqmnhiktlkiqfvlqknpqnllplk*xlllwfl*
fl**f*lsl*slnfqxlinfyl*efsiinyxndlrxsikfif*nnninckikfkk*fll

Frame C:
lifyrlf*istxsfkfnxiix**ryikl*snywmgncn**wwxxxn*lciytcnxkfrxx
rihi*ilsklylmgnhnwncsitrnntitnx*nlxcnyy*rkrn*igpyx*x*s**nffk
sksnlsnxnctxlfx*s*---

---DYMTLXIGTYSFEGKFIKKAIINGNRIVTINNXLLNENQLNSNSTIXKEKDSSNQLS
SFISIEIPHYDSTCIIRSKFFSFIRFK*ii*kl*kfnlyfkkilktyyrsnxcycygfcs
fcnnssslynr*ifxi**ifiyknfll*iixti*xkvlnlffktiilivk*slknsfy*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG624 (VHG624Q) /CSM/VH/VHG6-A/VHG624Q.Seq.d/                       1471   0.0
VHK477 (VHK477Q) /CSM/VH/VHK4-D/VHK477Q.Seq.d/                        761   0.0
VHI711 (VHI711Q) /CSM/VH/VHI7-A/VHI711Q.Seq.d/                        761   0.0
VHG524 (VHG524Q) /CSM/VH/VHG5-A/VHG524Q.Seq.d/                        761   0.0
AHQ777 (AHQ777Q) /CSM/AH/AHQ7-D/AHQ777Q.Seq.d/                        761   0.0
VHE894 (VHE894Q) /CSM/VH/VHE8-D/VHE894Q.Seq.d/                        678   0.0
VHK754 (VHK754Q) /CSM/VH/VHK7-C/VHK754Q.Seq.d/                        640   0.0
AFH408 (AFH408Q) /CSM/AF/AFH4-A/AFH408Q.Seq.d/                         40   0.061
AHP850 (AHP850Q) /CSM/AH/AHP8-C/AHP850Q.Seq.d/                         38   0.24
VFF374 (VFF374Q) /CSM/VF/VFF3-D/VFF374Q.Seq.d/                         36   0.95
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   702   0.0    5
(BJ440607) Dictyostelium discoideum cDNA clone:ddv44o06, 3' ...   452   0.0    3
(BJ443088) Dictyostelium discoideum cDNA clone:ddv51j20, 3' ...   287   0.0    4
(BJ441847) Dictyostelium discoideum cDNA clone:ddv48f03, 3' ...   287   0.0    4
(BJ357837) Dictyostelium discoideum cDNA clone:dda64j19, 3' ...   287   0.0    4
(BJ440606) Dictyostelium discoideum cDNA clone:ddv44o05, 3' ...   287   0.0    4
(BJ421903) Dictyostelium discoideum cDNA clone:ddv44o06, 5' ...   726   0.0    1
(BJ421902) Dictyostelium discoideum cDNA clone:ddv44o05, 5' ...   702   0.0    1
(BJ420935) Dictyostelium discoideum cDNA clone:ddv40l24, 5' ...   678   0.0    1
(BJ424254) Dictyostelium discoideum cDNA clone:ddv51j20, 5' ...   662   0.0    1
dna update 2008.11. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...   166   2e-44
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    50   3e-06
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    50   3e-06
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...    49   6e-06
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    44   8e-06
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    41   2e-04
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    36   0.001
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    39   0.002
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    36   0.023
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    33   0.028
protein update 2009. 3.10
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHG624 is cyt
5' end seq. ID VHG624F
5' end seq. 
>VHG624F.Seq
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAANAGTTTCAAATTTAACTNTATTA
TCTANTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGNGGNATTANAATTAGTTGTGTATTTATACATGTAATTNCAAATTTAGATANN
ANAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATNTAAAATTTATANTGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATNGATAGTGNTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTNCAATTGCACCATNTTATTTATNTGATCTTAGTNNN
NNNNNNN
Length of 5' end seq. 427
3' end seq. ID VHG624Z
3' end seq. 
>VHG624Z.Seq
NNNNNNNNNNATGATTATATGACATTACNAATTGGNACATACTCATTTGAAGGTAAATTT
ATAAAAAAAGCAATTATCAATGGCAATAGAATTGTAACAATAAATAATANATTATTAAAT
GAAAATCAACTAAATAGTAATTCAACTATAANTAAAGAAAAAGATTCATCAAATCAACTT
TCATCCTTTATCTCAATTGAAATACCTCATTATGATTCAACATGTATTATTAGATCCAAG
TTTTTCAGTTTTATTAGATTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTAC
TTCAAAAAAATCCTCAAAACTTACTACCGCTCAAATAANTGCTATTGTTATGGTTTCTGT
AGTTTTTGTAATAATTCTAGCTCTCTTTATAATCGTTAAATTTTCAANATCTGATAAATT
TTTATCTATAAGAATTTTCTATTATAAATTATTTNAACGATTTAAGANAAAGTATTAAAT
TTATTTTTTAAAACAATAATATTAATTGTAAAATAAAGTTTAAAAAATAGTTTTTATTAA
A
Length of 3' end seq. 541
Connected seq. ID VHG624P
Connected seq. 
>VHG624P.Seq
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAANAGTTTCAAATTTAACTNTATTA
TCTANTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGNGGNATTANAATTAGTTGTGTATTTATACATGTAATTNCAAATTTAGATANN
ANAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATNTAAAATTTATANTGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATNGATAGTGNTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTNCAATTGCACCATNTTATTTATNTGATCTTAGT---
-------ATGATTATATGACATTACNAATTGGNACATACTCATTTGAAGGTAAATTTATA
AAAAAAGCAATTATCAATGGCAATAGAATTGTAACAATAAATAATANATTATTAAATGAA
AATCAACTAAATAGTAATTCAACTATAANTAAAGAAAAAGATTCATCAAATCAACTTTCA
TCCTTTATCTCAATTGAAATACCTCATTATGATTCAACATGTATTATTAGATCCAAGTTT
TTCAGTTTTATTAGATTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTACTTC
AAAAAAATCCTCAAAACTTACTACCGCTCAAATAANTGCTATTGTTATGGTTTCTGTAGT
TTTTGTAATAATTCTAGCTCTCTTTATAATCGTTAAATTTTCAANATCTGATAAATTTTT
ATCTATAAGAATTTTCTATTATAAATTATTTNAACGATTTAAGANAAAGTATTAAATTTA
TTTTTTAAAACAATAATATTAATTGTAAAATAAAGTTTAAAAAATAGTTTTTATTAAA
Length of connected seq. 948
Full length Seq ID -
Full length Seq. -
Length of full length seq. -