VHG524
Library VH
(Link to library)
Clone ID VHG524
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11536-1
Original site URL
Representative seq. ID VHG524P
(Link to Original site)
Representative DNA sequence
>VHG524 (VHG524Q) /CSM/VH/VHG5-A/VHG524Q.Seq.d/
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAAGAGTTTCAAATTTAACTTTATTA
TCTAGTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGTGGTATTAAAATTAGTTATGTATTTATACATGTAATTTCAAATTTAGATAAA
AAAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATTTAAAATTTATAATGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATTGATAGTTTTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTTCAATTTCACCATTTTATTTATTTGATCTTAGTTTA
TTTAGCATAACAGTTAATTCACCATTCATTACTGAATCTGTTCCACCAACAATTACACTT
GTAACCCTACCATTTGAAAATGTAGATGATTTTTTACAATATTCAATTTTCTTTCAATTA
GTGTCAACTGATAATGTTGGTATATTAAAAAGCCATATACCACAAGTTTATTCATCGCAT
TCATCAAACTATGGAGATTTACAAATTTTCCAATGTAATACAGCTATTAATGATACGTCT
GAAACAXXXXXXXXXXGCATCATCATTAAATACACTTGATTTAATCATTAAATCAATGTT
TAAAAGTTCACAAACTGATGATGTATGTGGCAGTAAAGGATTTTCATTAAATGATGGAAA
TGATTATATGACATTACAAATTGGAACATACTCATTTGAAGGTAAATTTATAAAAAAAGC
AATTATCAATGGCAATAGAATTGTAACAATAAATAATAAATTATTAAATGAAAATCAACT
AAATAGTAATTCAACTATAACTAAAGAAAAAGATTCATCAAATCAACTTTCATCCTTTAT
CTCAATTGAAATACCTCATTATGATTCAAATGTATTATTAGATCCAAGTTTTTCAGTTTT
ATTAGATTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTACTTCAAAAAAATC
CTCAAAACTTACTACCGCTCAAATAATTGCTATTGTTATTGTTTCTGTAGTTTTTGTAAT
AATTCTAGCTCTCTTTATAATCGTTAAATTTTCAAAATCTGATAAATTTTTATCTATAAG
AATTTTCTATTATAAATTATTTAAACGATTTAAGAAAAAGTATTAAATTTATTTTTTAAA
AAATAATATTAATGTAAAATAAAGTTTAAAAAATAGTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
t*FFIDCFEFPPRVSNLTLLSSNSVTLNSNQTIGWEIVIDSGGGIKISYVFIHVISNLDK
KGYTFEFYPNSTSWETTIGIALSPETTPSQIFKIYNATIIDERGIRSDHIDSFKVDEIFS
NQSPIYPISISPFYLFDLSLFSITVNSPFITESVPPTITLVTLPFENVDDFLQYSIFFQL
VSTDNVGILKSHIPQVYSSHSSNYGDLQIFQCNTAINDTSET---

---ASSLNTLDLIIKSMFKSSQTDDVCGSKGFSLNDGNDYMTLQIGTYSFEGKFIKKAII
NGNRIVTINNKLLNENQLNSNSTITKEKDSSNQLSSFISIEIPHYDSNVLLDPSFSVLLD
SNESYKNSENSICTSKKSSKLTTAQIIAIVIVSVVFVIILALFIIVKFSKSDKFLSIRIF
YYKLFKRFKKKY*iyflknninvk*slknsf


Translated Amino Acid sequence (All Frames)
Frame A:
t*FFIDCFEFPPRVSNLTLLSSNSVTLNSNQTIGWEIVIDSGGGIKISYVFIHVISNLDK
KGYTFEFYPNSTSWETTIGIALSPETTPSQIFKIYNATIIDERGIRSDHIDSFKVDEIFS
NQSPIYPISISPFYLFDLSLFSITVNSPFITESVPPTITLVTLPFENVDDFLQYSIFFQL
VSTDNVGILKSHIPQVYSSHSSNYGDLQIFQCNTAINDTSET---

---ASSLNTLDLIIKSMFKSSQTDDVCGSKGFSLNDGNDYMTLQIGTYSFEGKFIKKAII
NGNRIVTINNKLLNENQLNSNSTITKEKDSSNQLSSFISIEIPHYDSNVLLDPSFSVLLD
SNESYKNSENSICTSKKSSKLTTAQIIAIVIVSVVFVIILALFIIVKFSKSDKFLSIRIF
YYKLFKRFKKKY*iyflknninvk*slknsf

Frame B:
lnfl*ivlnfhqefqi*lyylvialh*tliklldgkl*livvvvlklvmylym*fqi*ik
kdthlnsiqtlphgkpqlellyhqkqhhhkylkfimqllltkeeldrtilivlklmkffq
ikvqfiqfqfhhfiylilvyla*qlihhsllnlfhqqlhl*pyhlkm*mifyniqfsfn*
cqlimlvy*kaiyhkfihrihqtmeiykfsnviqllmirlk---

---hhh*ihli*slnqclkvhklmmyvavkdfh*mmemii*hyklehthlkvnl*kkqls
maiel*q*iiny*mkin*iviql*lkkkihqinfhplsqlkylimiqmyy*iqvfqfy*i
qmnhiktlkiqfvlqknpqnllplk*lllllfl*fl**f*lsl*slnfqnlinfyl*efs
iinylndlrksikfif*kiilm*nkv*kivf

Frame C:
lifyrlf*istksfkfnfii***ryikl*snywmgncn**wwwy*n*lciytcnfkfr*k
rihi*ilsklylmgnhnwncsitrnntitni*nl*cnyy*rkrn*igpy**f*s**nffk
sksnlsnfnftilfi*s*fi*hns*ftihy*icstnnytcnpti*kcr*fftifnflsis
vn**cwyikkpyttslfiafiklwrftnfpm*ysy**yv*n---

---iiikyt*fnh*inv*kftn**cmwq*rifik*wk*lyditnwnili*r*iykksnyq
wq*ncnnk**iik*kstk**fnyn*rkrfikstfilyln*ntsl*fkciirskffsfirf
k*ii*kl*kfnlyfkkilktyyrsnncycycfcsfcnnssslynr*ifki**ifiyknfl
l*ii*ti*ekvlnlffkk*y*ckikfkk*f

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG524 (VHG524Q) /CSM/VH/VHG5-A/VHG524Q.Seq.d/ 2250 0.0
VHK477 (VHK477Q) /CSM/VH/VHK4-D/VHK477Q.Seq.d/ 1273 0.0
VHK754 (VHK754Q) /CSM/VH/VHK7-C/VHK754Q.Seq.d/ 1203 0.0
AHQ777 (AHQ777Q) /CSM/AH/AHQ7-D/AHQ777Q.Seq.d/ 1187 0.0
VHE894 (VHE894Q) /CSM/VH/VHE8-D/VHE894Q.Seq.d/ 1181 0.0
VHI711 (VHI711Q) /CSM/VH/VHI7-A/VHI711Q.Seq.d/ 969 0.0
VHG624 (VHG624Q) /CSM/VH/VHG6-A/VHG624Q.Seq.d/ 708 0.0
VSH473 (VSH473Q) /CSM/VS/VSH4-D/VSH473Q.Seq.d/ 40 0.083
VSB889 (VSB889Q) /CSM/VS/VSB8-D/VSB889Q.Seq.d/ 40 0.083
VFN402 (VFN402Q) /CSM/VF/VFN4-A/VFN402Q.Seq.d/ 40 0.083

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 694 0.0 6
(BJ421902) Dictyostelium discoideum cDNA clone:ddv44o05, 5' ... 694 0.0 2
(BJ420935) Dictyostelium discoideum cDNA clone:ddv40l24, 5' ... 670 0.0 2
(BJ424254) Dictyostelium discoideum cDNA clone:ddv51j20, 5' ... 654 0.0 2
(BJ339305) Dictyostelium discoideum cDNA clone:dda64j19, 5' ... 569 0.0 2
(BJ443347) Dictyostelium discoideum cDNA clone:ddv52l13, 3' ... 525 0.0 5
(BJ440606) Dictyostelium discoideum cDNA clone:ddv44o05, 3' ... 305 0.0 4
(BJ357837) Dictyostelium discoideum cDNA clone:dda64j19, 3' ... 305 0.0 4
(BJ441847) Dictyostelium discoideum cDNA clone:ddv48f03, 3' ... 305 0.0 4
(BJ443088) Dictyostelium discoideum cDNA clone:ddv51j20, 3' ... 305 0.0 4
dna update 2008.11. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso... 399 e-110
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso... 105 4e-21
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso... 100 9e-20
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso... 100 2e-19
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso... 99 3e-19
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom... 91 9e-17
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos... 90 2e-16
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom... 86 4e-15
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom... 84 9e-15
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso... 81 7e-14
protein update 2009. 7.12
PSORT

psg: 0.75 gvh: 0.50 alm: 0.03 top: 0.53 tms: 0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
20.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for VHG524 is cyt

5' end seq. ID VHG524F
5' end seq.
>VHG524F.Seq
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAAGAGTTTCAAATTTAACTTTATTA
TCTAGTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGTGGTATTAAAATTAGTTATGTATTTATACATGTAATTTCAAATTTAGATAAA
AAAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATTTAAAATTTATAATGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATTGATAGTTTTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTTCAATTTCACCATTTTATTTATTTGATCTTAGTTTA
TTTAGCATAACAGTTAATTCACCATTCATTACTGAATCTGTTCCACCAACAATTACACTT
GTAACCCTACCATTTGAAAATGTAGATGATTTTTTACAATATTCAATTTTCTTTCAATTA
GTGTCAACTGATAATGTTGGTATATTAAAAAGCCATATACCACAAGTTTATTCATCGCAT
TCATCAAACTATGGAGATTTACAAATTTTCCAATGTAATACAGCTATTAATGATACGTCT
GAAACANNNNNNNNNN
Length of 5' end seq. 676
3' end seq. ID VHG524Z
3' end seq.
>VHG524Z.Seq
NNNNNNNNNNGCATCATCATTAAATACACTTGATTTAATCATTAAATCAATGTTTAAAAG
TTCACAAACTGATGATGTATGTGGCAGTAAAGGATTTTCATTAAATGATGGAAATGATTA
TATGACATTACAAATTGGAACATACTCATTTGAAGGTAAATTTATAAAAAAAGCAATTAT
CAATGGCAATAGAATTGTAACAATAAATAATAAATTATTAAATGAAAATCAACTAAATAG
TAATTCAACTATAACTAAAGAAAAAGATTCATCAAATCAACTTTCATCCTTTATCTCAAT
TGAAATACCTCATTATGATTCAAATGTATTATTAGATCCAAGTTTTTCAGTTTTATTAGA
TTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTACTTCAAAAAAATCCTCAAA
ACTTACTACCGCTCAAATAATTGCTATTGTTATTGTTTCTGTAGTTTTTGTAATAATTCT
AGCTCTCTTTATAATCGTTAAATTTTCAAAATCTGATAAATTTTTATCTATAAGAATTTT
CTATTATAAATTATTTAAACGATTTAAGAAAAAGTATTAAATTTATTTTTTAAAAAATAA
TATTAATGTAAAATAAAGTTTAAAAAATAGTTTTT
Length of 3' end seq. 635
Connected seq. ID VHG524P
Connected seq.
>VHG524P.Seq
ACTTAATTTTTTATAGATTGTTTTGAATTTCCACCAAGAGTTTCAAATTTAACTTTATTA
TCTAGTAATAGCGTTACATTAAACTCTAATCAAACTATTGGATGGGAAATTGTAATTGAT
AGTGGTGGTGGTATTAAAATTAGTTATGTATTTATACATGTAATTTCAAATTTAGATAAA
AAAGGATACACATTTGAATTCTATCCAAACTCTACCTCATGGGAAACCACAATTGGAATT
GCTCTATCACCAGAAACAACACCATCACAAATATTTAAAATTTATAATGCAACTATTATT
GACGAAAGAGGAATTAGATCGGACCATATTGATAGTTTTAAAGTTGATGAAATTTTTTCA
AATCAAAGTCCAATTTATCCAATTTCAATTTCACCATTTTATTTATTTGATCTTAGTTTA
TTTAGCATAACAGTTAATTCACCATTCATTACTGAATCTGTTCCACCAACAATTACACTT
GTAACCCTACCATTTGAAAATGTAGATGATTTTTTACAATATTCAATTTTCTTTCAATTA
GTGTCAACTGATAATGTTGGTATATTAAAAAGCCATATACCACAAGTTTATTCATCGCAT
TCATCAAACTATGGAGATTTACAAATTTTCCAATGTAATACAGCTATTAATGATACGTCT
GAAACA----------GCATCATCATTAAATACACTTGATTTAATCATTAAATCAATGTT
TAAAAGTTCACAAACTGATGATGTATGTGGCAGTAAAGGATTTTCATTAAATGATGGAAA
TGATTATATGACATTACAAATTGGAACATACTCATTTGAAGGTAAATTTATAAAAAAAGC
AATTATCAATGGCAATAGAATTGTAACAATAAATAATAAATTATTAAATGAAAATCAACT
AAATAGTAATTCAACTATAACTAAAGAAAAAGATTCATCAAATCAACTTTCATCCTTTAT
CTCAATTGAAATACCTCATTATGATTCAAATGTATTATTAGATCCAAGTTTTTCAGTTTT
ATTAGATTCAAATGAATCATATAAAAACTCTGAAAATTCAATTTGTACTTCAAAAAAATC
CTCAAAACTTACTACCGCTCAAATAATTGCTATTGTTATTGTTTCTGTAGTTTTTGTAAT
AATTCTAGCTCTCTTTATAATCGTTAAATTTTCAAAATCTGATAAATTTTTATCTATAAG
AATTTTCTATTATAAATTATTTAAACGATTTAAGAAAAAGTATTAAATTTATTTTTTAAA
AAATAATATTAATGTAAAATAAAGTTTAAAAAATAGTTTTT
Length of connected seq. 1291
Full length Seq ID -
Full length Seq. -
Length of full length seq. -