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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG494
Library VH
(Link to library)
Clone ID VHG494
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15622-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG494 (VHG494Q) /CSM/VH/VHG4-D/VHG494Q.Seq.d/
GCACATAAAATTTTAACACACACACACACAGATACAATAATTATCTTGTATATTAAATAT
ATAAAAACAAATAATAAACAAATAATATTTTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
AHKILTHTHTDTIIILYIKYIKTNNKQIIFLKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
AHKILTHTHTDTIIILYIKYIKTNNKQIIFLKK---


Frame B:
hikf*hthtqiq*lscilni*kqiink*yf*kk---


Frame C:
t*nfnththrynnylvy*iyknk**tnnifkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG494 (VHG494Q) /CSM/VH/VHG4-D/VHG494Q.Seq.d/                         30   6.0
SSJ496 (SSJ496Q) /CSM/SS/SSJ4-D/SSJ496Q.Seq.d/                         30   6.0
CHE855 (CHE855Q) /CSM/CH/CHE8-C/CHE855Q.Seq.d/                         30   6.0
own update 2002.12.28
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 21,765,820
Number of extensions: 1270837
Number of successful extensions: 168636
Number of sequences better than 10.0: 0
Length of query: 112
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 90
Effective length of database: 93,199,600,587
Effective search space: 8387964052830
Effective search space used: 8387964052830
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)








Dictyostelium discoideum cDNA Project Home
dna update 2008.11. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 81,549,807
protein update 2009. 7.12
PSORT 

 psg: 0.83  gvh: 0.19  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for VHG494 is nuc
5' end seq. ID VHG494F
5' end seq. 
>VHG494F.Seq
GCACATAAAATTTTAACACACACACACACAGATACAATAATTATCTTGTATATTAAATAT
ATAAAAACAAATAATAAACAAATAATATTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 112
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -