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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN878
Library AF
(Link to library)
Clone ID AFN878
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15540-1
Original site URL
Representative seq. ID AFN878P
(Link to Original site)
Representative DNA sequence 
>AFN878 (AFN878Q) /CSM/AF/AFN8-D/AFN878Q.Seq.d/
AACANCANCAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAAC
AACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAAT
AATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAATTCCAA
AACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAACAACAA
TTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAACAATTT
AATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAAT
AACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATG
GAAGGTCATCATCATTTACAACAACAACAACAACAACANCATCATCATCAACATCAACAN
CATCAACAAAATGGAAATGGTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTA
TCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTACXXXXXXXX
XXCACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGT
TTCCTNGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATT
CATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAAT
GAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAAC
TGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCA
AAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTC
ACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTT
CACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTT
AATGTTAAGCAATGGAAAAAATCAGTTCCNAATAAATCGAAAAAACAAAGATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NXXNNNNNNSNNNNNNSNNNNGNNGGMFNGGFVNNNNHNNNNNNNNNNGNLNFHNFLQFQ
NQLQNSNQQQQQQQLQQQQQLQQHQQQQQQLQQQQLQQQFNIGKPCNINQKKGRGANNNN
NNMPIGNQASLVISHPSLKMEGHHHLQQQQQQXHHHQHQXHQQNGNGNNTQIVNSAFLDL
SSPDSHNQMSPSSPICL---

---TSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPD
VNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDG
GFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQR
Translated Amino Acid sequence (All Frames) 
Frame A:
NXXNNNNNNSNNNNNNSNNNNGNNGGMFNGGFVNNNNHNNNNNNNNNNGNLNFHNFLQFQ
NQLQNSNQQQQQQQLQQQQQLQQHQQQQQQLQQQQLQQQFNIGKPCNINQKKGRGANNNN
NNMPIGNQASLVISHPSLKMEGHHHLQQQQQQXHHHQHQXHQQNGNGNNTQIVNSAFLDL
SSPDSHNQMSPSSPICL---

---hfitnhtnr**nryl*fstfpxiq*stshe*i*ilsylhssftrlqw*ckeiqtttr
cq*esfdfgwqclrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrw
wfhsllkanvlqws*lsyptllslypyksthk*sctpith*c*c*amekissx*iektki

Frame B:
txxtttttiviittttattttatmvvclmedlltittiiiitttiitmvt*tsttfynsk
tnskiqinnnnnnnynnnnnynntnnnnnnynnnnynnnlilanhvtlikrkvevliiii
ttcqlvikqv*llvilv*kwkviiiynnnnnnxiiininxinkmemviihkl*iqhs*iy
hhqihiikchhhhqfvy---

---TSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPD
VNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDG
GFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQR

Frame C:
xxqqqqqq****qqqqqqqqrqqwwyv*wric*q*qp****qqq**qw*lklpqlftipk
ptpkfksttttttttttttitttptttttittttittti*ywqtm*h*sker*rc*****
qhanw*sskfsy*ss*fkngrsssftttttttxssststxstkwkw**ytnckfsilrfi
itrft*snvtiitnlf---

---lhyqshksmikpvslilnvsxhsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqm
smrkl*fwmamstmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmv
vslsp*sqcvavvitlishstftlplqihsqmklysnhslmlmlsngknqfxinrknkd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN878 (AFN878Q) /CSM/AF/AFN8-D/AFN878Q.Seq.d/                       1205   0.0
SLI323 (SLI323Q) /CSM/SL/SLI3-A/SLI323Q.Seq.d/                       1041   0.0
SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/                       1041   0.0
CHC177 (CHC177Q) /CSM/CH/CHC1-D/CHC177Q.Seq.d/                       1041   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                       1041   0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                       1025   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                       1025   0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/                       1025   0.0
CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/                       1025   0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                       1019   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX569794|BX569794.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.24  1
BX156608|BX156608.1 Danio rerio genomic clone DKEY-152H23, genomic survey sequence.    48  0.24  1
BX640464|BX640464.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-22M8.    48  0.24  1
BX322655|BX322655.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-114E12.    48  0.24  1
AJ252242|AJ252242.1 pea seed-borne mosaic virus complete genome.    42  0.32  2
AC019092|AC019092.3 Homo sapiens chromosome 14 clone RP11-380G24, WORKING DRAFT SEQUENCE, 32 unordered pieces.    42  0.37  2
BX548000|BX548000.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-199M8.    42  0.38  2
BX640497|BX640497.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-108O9.    40  0.50  3
BX248390|BX248390.7 Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20.    40  0.57  4
BX322570|BX322570.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  0.58  4
dna update 2003. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta...    35   6.0
BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   6.0
protein update 2008.11.26
PSORT 

 psg: 0.75  gvh: 0.02  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.19
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for AFN878 is nuc
5' end seq. ID AFN878F
5' end seq. 
>AFN878F.Seq
AACANCANCAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAAC
AACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAAT
AATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAATTCCAA
AACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAACAACAA
TTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAACAATTT
AATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAAT
AACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATG
GAAGGTCATCATCATTTACAACAACAACAACAACAACANCATCATCATCAACATCAACAN
CATCAACAAAATGGAAATGGTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTA
TCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTAC--------
--
Length of 5' end seq. 592
3' end seq. ID AFN878Z
3' end seq. 
>AFN878Z.Seq
----------CACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATT
CTCAACGTTTCCTNGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTA
TCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAG
ATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAA
TTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATC
CACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATG
GTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCAC
TCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCA
TTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCNAATAAATCGAAAAAACAAAGAT
T
Length of 3' end seq. 531
Connected seq. ID AFN878P
Connected seq. 
>AFN878P.Seq
AACANCANCAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAAC
AACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAAT
AATAACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAATTCCAA
AACCAACTCCAAAATTCAAATCAACAACAACAACAACAACAACTACAACAACAACAACAA
TTACAACAACACCAACAACAACAACAACAATTACAACAACAACAATTACAACAACAATTT
AATATTGGCAAACCATGTAACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAAT
AACAACATGCCAATTGGTAATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATG
GAAGGTCATCATCATTTACAACAACAACAACAACAACANCATCATCATCAACATCAACAN
CATCAACAAAATGGAAATGGTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTA
TCATCACCAGATTCACATAATCAAATGTCACCATCATCACCAATTTGTTTAC--------
--CACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGT
TTCCTNGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATT
CATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAAT
GAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAAC
TGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCA
AAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTC
ACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTT
CACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTT
AATGTTAAGCAATGGAAAAAATCAGTTCCNAATAAATCGAAAAAACAAAGATT
Length of connected seq. 1123
Full length Seq ID -
Full length Seq. -
Length of full length seq. -