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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG430
Library VH
(Link to library)
Clone ID VHG430
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11269-1|Contig-U13533-1
Original site URL
Representative seq. ID VHG430P
(Link to Original site)
Representative DNA sequence 
>VHG430 (VHG430Q) /CSM/VH/VHG4-B/VHG430Q.Seq.d/
GTAATCGATGCATCTTTATCTTATGGCTCAATTAAATCTTGTAAATTTAGTGCAAACTCT
AAACAAATCCTTGCAACCACAATGAAGAATGATGTTTTACTATTCGATGTCAACTCTCAA
AAGTTAATCTCTGTAATGGGTAATCATAGTAAATCAGTTAATCATTGTTCATTGTCCAAT
GATGGTAACTACATTGTCACTGGTTCAGATGATGCAACTGCAAAGGTTTGGTCTTCAACT
TTGGGTACTCAATTAACCAACTTTTTAATTCCAGGTGATTGTTGGGCCAATTGTTTAGCA
TTCTCTCCAACTCAACCATTATTAGCAGTTGGTGCCACCGATTGTACCGTTAGATTATTT
GATGTCTCTTCAAATACAATATATCGTGAAGTTGCAAAACTTCATGGTCATACTCGTGCA
ATCACTAGTATTACCTTCTCTCCAAGTGGTAATTTAATTGCATCAACCTCTGAAGATTTA
CTTATTAAAGTTTGGAATGTTCAAACTCATAAAGCTGAATATACAATTGAAAAAGCTCAT
AACGATCCAATCAATTGTATCTCATTTAATCCAACCAATGAATGTGAACTCATCTCTTGT
TCCGATGATTATAGTACAAAGGTTTGGTCAAXXXXXXXXXXTTCAAAGGATTGGAAAACA
GTTTTACATAAAGAAAAAACCAATGGTAAGATCACCAGATCTTCAGCCCACCCAAGTTTA
AACATACAATCAACTGAATCACCAGATTATATCGATTTATTCGCTTTCTCAACATGGACT
AATTGTGTCAATCTTCTCAATTGTAGTGAAAAATATTTTGATCCAATCGTTTCATTCGAT
GATTGGGTAGAATCTGTTGAATTCTCAACATCTGGTGATTTATTAGCTGCTGGTTCAAGA
ACAAAACAAGTTAAAATCTTTTCACCACTTAATGATAAACCAGTTACTCATCAAACCTCT
TCAAGTTATGTAACCTCTTTATCATTCTCACCAAATGATAAATACCTTGCTATTGGTACA
TTTGATGGTACTGTTGAATTATTGGATATTGCCTCTGGTAAATTAAGACGTATTCTTACC
ACTCAAGTATCTTCAATCACCTCTCTAAAATTCTTAGATTCCACTCGTTTAGTTTCAGTT
TCAAATGATCGTTCATTAATAGTTTGGAATTTCTCAACTTCCTCAATGAAAATGAATTTA
TCCATCAATCACCAATAACTTCAATGGATATTCATCAAAATCAAATTATTACTGCGATAA
AAAGGTAATATTATTTCTTAAATATCATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
VIDASLSYGSIKSCKFSANSKQILATTMKNDVLLFDVNSQKLISVMGNHSKSVNHCSLSN
DGNYIVTGSDDATAKVWSSTLGTQLTNFLIPGDCWANCLAFSPTQPLLAVGATDCTVRLF
DVSSNTIYREVAKLHGHTRAITSITFSPSGNLIASTSEDLLIKVWNVQTHKAEYTIEKAH
NDPINCISFNPTNECELISCSDDYSTKVWS---

---SKDWKTVLHKEKTNGKITRSSAHPSLNIQSTESPDYIDLFAFSTWTNCVNLLNCSEK
YFDPIVSFDDWVESVEFSTSGDLLAAGSRTKQVKIFSPLNDKPVTHQTSSSYVTSLSFSP
NDKYLAIGTFDGTVELLDIASGKLRRILTTQVSSITSLKFLDSTRLVSVSNDRSLIVWNF
STSSMKMNLSINHQ*lqwifikiklllr*kgniis*is*
Translated Amino Acid sequence (All Frames) 
Frame A:
VIDASLSYGSIKSCKFSANSKQILATTMKNDVLLFDVNSQKLISVMGNHSKSVNHCSLSN
DGNYIVTGSDDATAKVWSSTLGTQLTNFLIPGDCWANCLAFSPTQPLLAVGATDCTVRLF
DVSSNTIYREVAKLHGHTRAITSITFSPSGNLIASTSEDLLIKVWNVQTHKAEYTIEKAH
NDPINCISFNPTNECELISCSDDYSTKVWS---

---fkglensft*rknqw*dhqifsppkfkhtin*itrlyrfirflnmd*lcqssql**k
if*snrfir*lgric*ilniw*fiscwfknkts*nlftt***tsyssnlfklcnlfiilt
k**ipcywyi*wyc*iigyclw*iktysyhssifnhlskilrfhsfsfsfk*sfinslef
lnflnenefihqspitsmdihqnqiitaikr*yyflnii

Frame B:
*smhlylmaqlnlvnlvqtlnkslqpq*rmmfyysmstlks*sl*wviivnqliivhcpm
mvttlslvqmmqlqrfglqlwvln*ptf*fqvivgpiv*hslqlnhy*qlvppivpldyl
mslqiqyivklqnfmvilvqslvlpslqvvi*lhqplkiyllkfgmfkliklniqlkkli
tiqsivshliqpmnvnsslvpmiivqrfgq---

---SKDWKTVLHKEKTNGKITRSSAHPSLNIQSTESPDYIDLFAFSTWTNCVNLLNCSEK
YFDPIVSFDDWVESVEFSTSGDLLAAGSRTKQVKIFSPLNDKPVTHQTSSSYVTSLSFSP
NDKYLAIGTFDGTVELLDIASGKLRRILTTQVSSITSLKFLDSTRLVSVSNDRSLIVWNF
STSSMKMNLSINHQ*lqwifikiklllr*kgniis*is*

Frame C:
nrcifilwln*il*i*ckl*tnpcnhnee*cftircqlskvnlcng*s**is*slfivq*
w*lhchwfr*cnckglvfnfgysinqlfnsr*llgqlfsilsnstiisswchrlyr*ii*
clfkynis*scktswsyscnh*yyllskw*fncinl*rfty*slecsns*s*iyn*kss*
rsnqlyli*snq*m*thllfr*l*ykglv---

---qrigkqfyikkkpmvrspdlqptqv*tynqlnhqiisiyslsqhglivsifsivvkn
iliqsfhsmig*nllnsqhlviy*llvqeqnklksfhhlminqllikplqvm*plyhshq
mintlllvhlmvllnywilplvn*dvflplkylqspl*ns*iplv*fqfqmivh**fgis
qlpq*k*iypsitnnfngyssksnyycdkkvilflkyhk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG430 (VHG430Q) /CSM/VH/VHG4-B/VHG430Q.Seq.d/                       2500   0.0
VHO554 (VHO554Q) /CSM/VH/VHO5-C/VHO554Q.Seq.d/                       1239   0.0
VSF740 (VSF740Q) /CSM/VS/VSF7-B/VSF740Q.Seq.d/                       1223   0.0
AHD435 (AHD435Q) /CSM/AH/AHD4-B/AHD435Q.Seq.d/                       1215   0.0
VHA458 (VHA458Q) /CSM/VH/VHA4-C/VHA458Q.Seq.d/                       1211   0.0
VHC112 (VHC112Q) /CSM/VH/VHC1-A/VHC112Q.Seq.d/                       1199   0.0
AHG884 (AHG884Q) /CSM/AH/AHG8-D/AHG884Q.Seq.d/                       1114   0.0
VFM679 (VFM679Q) /CSM/VF/VFM6-D/VFM679Q.Seq.d/                        646   0.0
VFN450 (VFN450Q) /CSM/VF/VFN4-C/VFN450Q.Seq.d/                         38   0.33
VFD859 (VFD859Q) /CSM/VF/VFD8-C/VFD859Q.Seq.d/                         38   0.33
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440345) Dictyostelium discoideum cDNA clone:ddv43l08, 3' ...  1289   0.0    1
(BJ421655) Dictyostelium discoideum cDNA clone:ddv43l08, 5' ...  1251   0.0    1
(BJ426903) Dictyostelium discoideum cDNA clone:ddv60k13, 5' ...  1207   0.0    1
(BJ418062) Dictyostelium discoideum cDNA clone:ddv31d16, 5' ...  1199   0.0    1
(BJ445781) Dictyostelium discoideum cDNA clone:ddv60k13, 3' ...  1082   0.0    3
(BJ437695) Dictyostelium discoideum cDNA clone:ddv35g03, 3' ...  1082   0.0    2
(BJ436558) Dictyostelium discoideum cDNA clone:ddv31d16, 3' ...  1082   0.0    2
(BJ349681) Dictyostelium discoideum cDNA clone:dda37f10, 3' ...  1082   0.0    2
(BJ351860) Dictyostelium discoideum cDNA clone:dda44h22, 3' ...  1078   0.0    2
(AU265713) Dictyostelium discoideum vegetative cDNA clone:VS...   936   0.0    3
dna update 2008.11. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001037_1323(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...   157   1e-36
CP001037_1143(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...   152   3e-35
CP000117_1553(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   146   1e-33
CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   139   3e-31
CP001291_2528(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   137   1e-30
CU074270_1(CU074270|pid:none) Podospora anserina genomic DNA, NW...   134   9e-30
CP000686_859(CP000686|pid:none) Roseiflexus sp. RS-1, complete g...   133   2e-29
CU074274_1(CU074274|pid:none) Podospora anserina genomic DNA, NW...   126   2e-27
AF323585_1(AF323585|pid:none) Podospora anserina beta transducin...   126   2e-27
CP000393_4067(CP000393|pid:none) Trichodesmium erythraeum IMS101...   125   3e-27
protein update 2009. 7.12
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHG430 is cyt
5' end seq. ID VHG430F
5' end seq. 
>VHG430F.Seq
GTAATCGATGCATCTTTATCTTATGGCTCAATTAAATCTTGTAAATTTAGTGCAAACTCT
AAACAAATCCTTGCAACCACAATGAAGAATGATGTTTTACTATTCGATGTCAACTCTCAA
AAGTTAATCTCTGTAATGGGTAATCATAGTAAATCAGTTAATCATTGTTCATTGTCCAAT
GATGGTAACTACATTGTCACTGGTTCAGATGATGCAACTGCAAAGGTTTGGTCTTCAACT
TTGGGTACTCAATTAACCAACTTTTTAATTCCAGGTGATTGTTGGGCCAATTGTTTAGCA
TTCTCTCCAACTCAACCATTATTAGCAGTTGGTGCCACCGATTGTACCGTTAGATTATTT
GATGTCTCTTCAAATACAATATATCGTGAAGTTGCAAAACTTCATGGTCATACTCGTGCA
ATCACTAGTATTACCTTCTCTCCAAGTGGTAATTTAATTGCATCAACCTCTGAAGATTTA
CTTATTAAAGTTTGGAATGTTCAAACTCATAAAGCTGAATATACAATTGAAAAAGCTCAT
AACGATCCAATCAATTGTATCTCATTTAATCCAACCAATGAATGTGAACTCATCTCTTGT
TCCGATGATTATAGTACAAAGGTTTGGTCAANNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID VHG430Z
3' end seq. 
>VHG430Z.Seq
NNNNNNNNNNTTCAAAGGATTGGAAAACAGTTTTACATAAAGAAAAAACCAATGGTAAGA
TCACCAGATCTTCAGCCCACCCAAGTTTAAACATACAATCAACTGAATCACCAGATTATA
TCGATTTATTCGCTTTCTCAACATGGACTAATTGTGTCAATCTTCTCAATTGTAGTGAAA
AATATTTTGATCCAATCGTTTCATTCGATGATTGGGTAGAATCTGTTGAATTCTCAACAT
CTGGTGATTTATTAGCTGCTGGTTCAAGAACAAAACAAGTTAAAATCTTTTCACCACTTA
ATGATAAACCAGTTACTCATCAAACCTCTTCAAGTTATGTAACCTCTTTATCATTCTCAC
CAAATGATAAATACCTTGCTATTGGTACATTTGATGGTACTGTTGAATTATTGGATATTG
CCTCTGGTAAATTAAGACGTATTCTTACCACTCAAGTATCTTCAATCACCTCTCTAAAAT
TCTTAGATTCCACTCGTTTAGTTTCAGTTTCAAATGATCGTTCATTAATAGTTTGGAATT
TCTCAACTTCCTCAATGAAAATGAATTTATCCATCAATCACCAATAACTTCAATGGATAT
TCATCAAAATCAAATTATTACTGCGATAAAAAGGTAATATTATTTCTTAAATATCATAAA
Length of 3' end seq. 660
Connected seq. ID VHG430P
Connected seq. 
>VHG430P.Seq
GTAATCGATGCATCTTTATCTTATGGCTCAATTAAATCTTGTAAATTTAGTGCAAACTCT
AAACAAATCCTTGCAACCACAATGAAGAATGATGTTTTACTATTCGATGTCAACTCTCAA
AAGTTAATCTCTGTAATGGGTAATCATAGTAAATCAGTTAATCATTGTTCATTGTCCAAT
GATGGTAACTACATTGTCACTGGTTCAGATGATGCAACTGCAAAGGTTTGGTCTTCAACT
TTGGGTACTCAATTAACCAACTTTTTAATTCCAGGTGATTGTTGGGCCAATTGTTTAGCA
TTCTCTCCAACTCAACCATTATTAGCAGTTGGTGCCACCGATTGTACCGTTAGATTATTT
GATGTCTCTTCAAATACAATATATCGTGAAGTTGCAAAACTTCATGGTCATACTCGTGCA
ATCACTAGTATTACCTTCTCTCCAAGTGGTAATTTAATTGCATCAACCTCTGAAGATTTA
CTTATTAAAGTTTGGAATGTTCAAACTCATAAAGCTGAATATACAATTGAAAAAGCTCAT
AACGATCCAATCAATTGTATCTCATTTAATCCAACCAATGAATGTGAACTCATCTCTTGT
TCCGATGATTATAGTACAAAGGTTTGGTCAA----------TTCAAAGGATTGGAAAACA
GTTTTACATAAAGAAAAAACCAATGGTAAGATCACCAGATCTTCAGCCCACCCAAGTTTA
AACATACAATCAACTGAATCACCAGATTATATCGATTTATTCGCTTTCTCAACATGGACT
AATTGTGTCAATCTTCTCAATTGTAGTGAAAAATATTTTGATCCAATCGTTTCATTCGAT
GATTGGGTAGAATCTGTTGAATTCTCAACATCTGGTGATTTATTAGCTGCTGGTTCAAGA
ACAAAACAAGTTAAAATCTTTTCACCACTTAATGATAAACCAGTTACTCATCAAACCTCT
TCAAGTTATGTAACCTCTTTATCATTCTCACCAAATGATAAATACCTTGCTATTGGTACA
TTTGATGGTACTGTTGAATTATTGGATATTGCCTCTGGTAAATTAAGACGTATTCTTACC
ACTCAAGTATCTTCAATCACCTCTCTAAAATTCTTAGATTCCACTCGTTTAGTTTCAGTT
TCAAATGATCGTTCATTAATAGTTTGGAATTTCTCAACTTCCTCAATGAAAATGAATTTA
TCCATCAATCACCAATAACTTCAATGGATATTCATCAAAATCAAATTATTACTGCGATAA
AAAGGTAATATTATTTCTTAAATATCATAAA
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -