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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG423
Library VH
(Link to library)
Clone ID VHG423
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG423 (VHG423Q) /CSM/VH/VHG4-A/VHG423Q.Seq.d/
XXXXXXXXXXGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGA
TAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCAC
TCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTG
TACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACA
TAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATAC
TCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAAT
CAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATT
AACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATT
AAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCT
TTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAAT
ATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---FTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICT
CDNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSIN
SKGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLS
FTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLI
Translated Amino Acid sequence (All Frames) 
Frame A:
---nlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivvfv
hvimnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*tqs
iqkvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmmtf
rsqqsissnismkkqksqkyrevqllvlllvvlllfh*


Frame B:
---iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wyly
m***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirlnq
fkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***pf
vhsnq*vpisr*knknlkniercncwyccwlccccfin


Frame C:
---FTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICT
CDNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSIN
SKGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLS
FTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/                       1126   0.0
VHQ244 (VHQ244Q) /CSM/VH/VHQ2-B/VHQ244Q.Seq.d/                       1126   0.0
VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/                       1126   0.0
VHP829 (VHP829Q) /CSM/VH/VHP8-B/VHP829Q.Seq.d/                       1126   0.0
VHP763 (VHP763Q) /CSM/VH/VHP7-C/VHP763Q.Seq.d/                       1126   0.0
VHP673 (VHP673Q) /CSM/VH/VHP6-D/VHP673Q.Seq.d/                       1126   0.0
VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/                       1126   0.0
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/                       1126   0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/                       1126   0.0
VHP239 (VHP239Q) /CSM/VH/VHP2-B/VHP239Q.Seq.d/                       1126   0.0
own update 2002.12.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2...  1124   0.0    2
(BJ446789) Dictyostelium discoideum cDNA clone:ddv63h22, 3' ...  1124   0.0    2
(BJ446630) Dictyostelium discoideum cDNA clone:ddv63g12, 3' ...  1124   0.0    2
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ...  1124   0.0    2
(BJ446437) Dictyostelium discoideum cDNA clone:ddv62a20, 3' ...  1124   0.0    2
(BJ446427) Dictyostelium discoideum cDNA clone:ddv62n15, 3' ...  1124   0.0    2
(BJ446355) Dictyostelium discoideum cDNA clone:ddv62o11, 3' ...  1124   0.0    2
(BJ446323) Dictyostelium discoideum cDNA clone:ddv62j08, 3' ...  1124   0.0    2
(BJ446255) Dictyostelium discoideum cDNA clone:ddv62k05, 3' ...  1124   0.0    2
(BJ446052) Dictyostelium discoideum cDNA clone:ddv61a18, 3' ...  1124   0.0    2
dna update 2008.11. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   8e-28
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   108   1e-22
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    96   1e-18
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   2e-18
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    93   8e-18
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    92   1e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   5e-17
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    90   7e-17
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    89   1e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    86   1e-15
protein update 2009. 7.12
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.20  top: 0.40  tms: 0.07  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 20.0 %: vesicles of secretory system
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VHG423 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG423Z
3' end seq. 
>VHG423Z.Seq
NNNNNNNNNNGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGA
TAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCAC
TCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTG
TACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACA
TAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATAC
TCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAAT
CAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATT
AACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATT
AAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCT
TTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAAT
ATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATT
Length of 3' end seq. 658
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -