NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG407
Library VH
(Link to library)
Clone ID VHG407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VHG407P
(Link to Original site)
Representative DNA sequence 
>VHG407 (VHG407Q) /CSM/VH/VHG4-A/VHG407Q.Seq.d/
TTTTAATTNACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAG
CTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGG
ATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCA
GGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAAT
GGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAG
AAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTANAAGCTTGAATGTGA
ATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAAT
TTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAG
TCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGXXXXXXXXXXAATAGTAGCATGA
TTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATA
GTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTNTAAGTCAGAATCCATTC
TAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGT
GGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTC
CGGTTATTGTGGTGGGTGGCTAAATTNTAATTTATATCCTCGTTCCGCTCAACTCTTCGA
TTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGA
GGGGTTGAGGCTTTTCCATTAGTTCTTAAAAATTGAAGAAACAATATAGAAATTCTATTT
ATACATAAAAATTTTATATATATAATATAAATAATATTTTCTTCTTTGTTTTGTCATACA
TACACAACCATTGTCCACTCCAAACAGATCATTTGTAAATTACATCCAAACCACACACAC
TCTCTCACTCACCCACACACCAATAACACAACACATNCTTATATAAAGNAA
sequence update 2002.10.25
Translated Amino Acid sequence 
f*xt*ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fikta
grwpwksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvxa*m*
irvelslvqilmvvaniqknll*rpkwgrvp*QWNSLMGESILRFGLTLSNK---

---NSSMI*yernchagslvcrfi*qnsdlplpsvg*wlnaxksesiletqtkcfrv*ml
*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*ixiyilvplnssivddyqmn*vl*a
se*rsvtrg*gfsiss*klkkqyrnsiyt*kfyiyninnifffvlsyihnhcplqtdhl*
itskphtlshspthq*hntxlykx
Translated Amino Acid sequence (All Frames) 
Frame A:
f*xt*ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fikta
grwpwksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvxa*m*
irvelslvqilmvvaniqknll*rpkwgrvp*QWNSLMGESILRFGLTLSNK---

---NSSMI*yernchagslvcrfi*qnsdlplpsvg*wlnaxksesiletqtkcfrv*ml
*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*ixiyilvplnssivddyqmn*vl*a
se*rsvtrg*gfsiss*klkkqyrnsiyt*kfyiyninnifffvlsyihnhcplqtdhl*
itskphtlshspthq*hntxlykx

Frame B:
fnxlnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqq
dgghgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvtxklece
fewscl*crs*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslir---

---iva*fstrgtvmpdhwsvglfdkivtcryhpldng*tpxsqnpf*krkpnalececc
r*h*vvgggplstlnhminrcytavsfrllwwvakx*fissfrstlrl*ttik*trcckl
pssvqlrgveafplvlkn*rnnieilfihknfiyii*iifsslfchtyttivhskqiick
lhpnhthslthphtnntthxyikx

Frame C:
lixligf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsr
tvamevgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rxslnvn
ssgvvfsadldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**---

---**hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvv
gnirllvgdhfql*ti*liavtlqfpsgycggwlnxnlyprsaqlfdcrrlsnelgavsf
rvafsyeglrlfh*flkieeti*kfylyikilyi*yk*yfllcfvihtqplstpnrsfvn
yiqtthtlslthtpitqhxli*x
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG407 (VHG407Q) /CSM/VH/VHG4-A/VHG407Q.Seq.d/                       1756   0.0
VHM433 (VHM433Q) /CSM/VH/VHM4-B/VHM433Q.Seq.d/                       1013   0.0
VHB850 (VHB850Q) /CSM/VH/VHB8-C/VHB850Q.Seq.d/                       1009   0.0
VHC820 (VHC820Q) /CSM/VH/VHC8-A/VHC820Q.Seq.d/                       1007   0.0
VHD496 (VHD496Q) /CSM/VH/VHD4-D/VHD496Q.Seq.d/                        995   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                        989   0.0
CHL330 (CHL330Q) /CSM/CH/CHL3-B/CHL330Q.Seq.d/                        985   0.0
VHI538 (VHI538Q) /CSM/VH/VHI5-B/VHI538Q.Seq.d/                        979   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                        977   0.0
VHD536 (VHD536Q) /CSM/VH/VHD5-B/VHD536Q.Seq.d/                        977   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1009   0.0    2
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...   969   0.0    2
(DQ340386) Dictyostelium purpureum 17S ribosomal RNA, 5.8S r...   781   0.0    6
(BJ425287) Dictyostelium discoideum cDNA clone:ddv55b10, 5' ...  1009   0.0    1
(BJ421589) Dictyostelium discoideum cDNA clone:ddv43n02, 5' ...  1009   0.0    1
(BJ418937) Dictyostelium discoideum cDNA clone:ddv34d14, 5' ...  1009   0.0    1
(BJ419433) Dictyostelium discoideum cDNA clone:ddv36h06, 5' ...  1007   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1001   0.0    1
(BJ420021) Dictyostelium discoideum cDNA clone:ddv37p24, 5' ...   995   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...   985   0.0    1
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   8e-14
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    43   1e-04
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.006
protein update 2009. 3. 9
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHG407 is mit
5' end seq. ID VHG407F
5' end seq. 
>VHG407F.Seq
TTTTAATTNACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAG
CTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGG
ATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCA
GGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAAT
GGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAG
AAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTANAAGCTTGAATGTGA
ATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAAT
TTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAG
TCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGNNNNNNNNNN
Length of 5' end seq. 527
3' end seq. ID VHG407Z
3' end seq. 
>VHG407Z.Seq
NNNNNNNNNNAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGT
CTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAA
CGCCTNTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTT
GTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATC
GCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTNTAATTTATAT
CCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGC
TTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTAAAAATTGAA
GAAACAATATAGAAATTCTATTTATACATAAAAATTTTATATATATAATATAAATAATAT
TTTCTTCTTTGTTTTGTCATACATACACAACCATTGTCCACTCCAAACAGATCATTTGTA
AATTACATCCAAACCACACACACTCTCTCACTCACCCACACACCAATAACACAACACATN
CTTATATAAAGNAA
Length of 3' end seq. 614
Connected seq. ID VHG407P
Connected seq. 
>VHG407P.Seq
TTTTAATTNACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAG
CTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGG
ATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCA
GGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAAT
GGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAG
AAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTANAAGCTTGAATGTGA
ATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAAT
TTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAG
TCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGG----------AATAGTAGCATGA
TTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATA
GTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTNTAAGTCAGAATCCATTC
TAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGT
GGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTC
CGGTTATTGTGGTGGGTGGCTAAATTNTAATTTATATCCTCGTTCCGCTCAACTCTTCGA
TTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGA
GGGGTTGAGGCTTTTCCATTAGTTCTTAAAAATTGAAGAAACAATATAGAAATTCTATTT
ATACATAAAAATTTTATATATATAATATAAATAATATTTTCTTCTTTGTTTTGTCATACA
TACACAACCATTGTCCACTCCAAACAGATCATTTGTAAATTACATCCAAACCACACACAC
TCTCTCACTCACCCACACACCAATAACACAACACATNCTTATATAAAGNAA
Length of connected seq. 1121
Full length Seq ID -
Full length Seq. -
Length of full length seq. -