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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG394
Library VH
(Link to library)
Clone ID VHG394
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VHG394P
(Link to Original site)
Representative DNA sequence 
>VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/
TTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCAT
TTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACA
TTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGG
AAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAA
ATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTT
TAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTG
TCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCG
AAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTT
GGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAA
CACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGG
ATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTT
TTCTTGTTAXXXXXXXXXXCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGA
TGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACT
AACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTT
GTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCA
CTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGG
CTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGA
ATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGAT
TAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATT
TATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTG
TAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATT
sequence update 2002.10.25
Translated Amino Acid sequence 
gf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvame
vgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvv
fsadldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvalt
lvtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSFLV---

---SQALIATLLFDPSMSALLIIVKQNSQSVGLFTH*qgt*agfrps*drlvlpyccqlf
a***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvg
nirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfr
vafsyeglrlfh
Translated Amino Acid sequence (All Frames) 
Frame A:
ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpw
ksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvel
slvqilmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*
h**lyrpkgkrvkipapsngilg*pivirdinwrsrksylfll---

---qpsahsdaaf*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsftlllsiv
cviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalececcr
*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*trccklp
ssvqlrgveafp

Frame B:
wilklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghg
sryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewsc
l*crs*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfn
tsdfigrkgsglkflhhrmgy*gnrs*sgtsiggrgrvifsc---

---SQALIATLLFDPSMSALLIIVKQNSQSVGLFTH*qgt*agfrps*drlvlpyccqlf
a***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvg
nirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfr
vafsyeglrlfh

Frame C:
gf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvame
vgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvv
fsadldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvalt
lvtl*aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSFLV---

---akrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptvvncl
rnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*v
tlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*ase
*rsvtrg*gfsi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       2415   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1308   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1294   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1287   0.0
VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/                       1279   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1277   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1275   0.0
CHP713 (CHP713Q) /CSM/CH/CHP7-A/CHP713Q.Seq.d/                       1267   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1261   0.0
VHO493 (VHO493Q) /CSM/VH/VHO4-D/VHO493Q.Seq.d/                       1255   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1326   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1326   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1310   0.0    1
(BJ393837) Dictyostelium discoideum cDNA clone:dds32f22, 5' ...  1308   0.0    1
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1294   0.0    1
(BJ425368) Dictyostelium discoideum cDNA clone:ddv55b18, 5' ...  1287   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1279   0.0    1
(BJ424961) Dictyostelium discoideum cDNA clone:ddv54m04, 5' ...  1277   0.0    1
(BJ370917) Dictyostelium discoideum cDNA clone:ddc55n23, 5' ...  1275   0.0    1
(BJ370161) Dictyostelium discoideum cDNA clone:ddc53j03, 5' ...  1267   0.0    1
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   100   8e-20
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    46   0.003
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.007
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    44   0.012
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.060
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    38   0.66
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    38   0.86
EF192055_1(EF192055|pid:none) Trichosanthes dioica clone TDM01 p...    35   4.3
protein update 2009. 7.12
PSORT 

 psg: 0.75  gvh: 0.61  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.34  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHG394 is nuc
5' end seq. ID VHG394F
5' end seq. 
>VHG394F.Seq
TTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCAT
TTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACA
TTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGG
AAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAA
ATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTT
TAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTG
TCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCG
AAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTT
GGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAA
CACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGG
ATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTT
TTCTTGTTANNNNNNNNNN
Length of 5' end seq. 679
3' end seq. ID VHG394Z
3' end seq. 
>VHG394Z.Seq
NNNNNNNNNNCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTC
TTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAA
CGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGT
TTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGT
AGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCC
TCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAG
GTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTG
TTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTC
GTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCC
GAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATT
Length of 3' end seq. 579
Connected seq. ID VHG394P
Connected seq. 
>VHG394P.Seq
TTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCAT
TTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACA
TTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGG
AAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAA
ATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTT
TAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTG
TCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCG
AAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTT
GGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAA
CACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGG
ATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTT
TTCTTGTTA----------CAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGA
TGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACT
AACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTT
GTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCA
CTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGG
CTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGA
ATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGAT
TAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATT
TATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTG
TAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATT
Length of connected seq. 1238
Full length Seq ID -
Full length Seq. -
Length of full length seq. -