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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG390
Library VH
(Link to library)
Clone ID VHG390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID VHG390P
(Link to Original site)
Representative DNA sequence 
>VHG390 (VHG390Q) /CSM/VH/VHG3-D/VHG390Q.Seq.d/
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXGCTCTCATTTCCATTCCAG
TTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAA
AGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACG
GTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTG
TTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTC
ACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTT
ATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTT
TACTTATGGAATCCCTTTCNGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATNCC
AAAATAAATTCTATATTGGTGATGGTGTTAGATTCANNCCATACAGTGCCACTCGTATTC
sequence update 2002.10.25
Translated Amino Acid sequence 
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGYPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEXQNKFYIGDGVRFXPYSATRI
Translated Amino Acid sequence (All Frames) 
Frame A:
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGYPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEXQNKFYIGDGVRFXPYSATRI

Frame B:
fqkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslf
iksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvl
g*vplllyfylwnpfxlsctlldfig*nxkinsilvmvldsxhtvplvf

Frame C:
fkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcs
sshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtwlsilgfrwfwcl
vrclccctftygipfxflars*tslgrxpk*ilyw*wc*ixxiqchsy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG390 (VHG390Q) /CSM/VH/VHG3-D/VHG390Q.Seq.d/                        965   0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        957   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        957   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        957   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                        957   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                        957   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                        957   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                        957   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                        957   0.0
CHN840 (CHN840Q) /CSM/CH/CHN8-B/CHN840Q.Seq.d/                        957   0.0
own update 2003.10.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440468) Dictyostelium discoideum cDNA clone:ddv43d23, 3' ...   963   0.0    1
(U38803) Dictyostelium discoideum vacuolar proton ATPase 100...   955   0.0    1
(BJ446226) Dictyostelium discoideum cDNA clone:ddv62f03, 3' ...   955   0.0    1
(BJ444917) Dictyostelium discoideum cDNA clone:ddv57i24, 3' ...   955   0.0    1
(BJ408570) Dictyostelium discoideum cDNA clone:dds46c07, 3' ...   955   0.0    1
(BJ407832) Dictyostelium discoideum cDNA clone:dds43d23, 3' ...   955   0.0    1
(BJ405825) Dictyostelium discoideum cDNA clone:dds33l02, 3' ...   955   0.0    1
(BJ386061) Dictyostelium discoideum cDNA clone:ddc57d06, 3' ...   955   0.0    1
(BJ385893) Dictyostelium discoideum cDNA clone:ddc56b13, 3' ...   955   0.0    1
(BJ385028) Dictyostelium discoideum cDNA clone:ddc51f16, 3' ...   955   0.0    1
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   330   3e-89
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   330   3e-89
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   182   6e-45
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   180   3e-44
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   180   3e-44
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   180   3e-44
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   179   5e-44
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   179   8e-44
AP005666_3(AP005666|pid:none) Lotus japonicus genomic DNA, chrom...   171   1e-41
AJ438978_1(AJ438978|pid:none) Mesembryanthemum crystallinum mRNA...   171   1e-41
protein update 2009. 7.12
PSORT 

 psg: 0.85  gvh: 0.36  alm: 0.27  top: 0.60  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHG390 is nuc
5' end seq. ID VHG390F
5' end seq. 
>VHG390F.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 161
3' end seq. ID VHG390Z
3' end seq. 
>VHG390Z.Seq
NNNNNNNNNNGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAA
GAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGA
TGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGT
TCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTA
TCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACG
TATTCTCATTGGTCAAGTCGAACGTGGTTATCCATTCTTGGCTTTCGTTGGTTTTGGTGC
TTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCNGCTTTCTTGCA
CGCTCTTAGACTTCATTGGGTAGAATNCCAAAATAAATTCTATATTGGTGATGGTGTTAG
ATTCANNCCATACAGTGCCACTCGTATTC
Length of 3' end seq. 509
Connected seq. ID VHG390P
Connected seq. 
>VHG390P.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAA----------GCTCTCATTTCCATTCCAG
TTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAA
AGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACG
GTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTG
TTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTC
ACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTT
ATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTT
TACTTATGGAATCCCTTTCNGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATNCC
AAAATAAATTCTATATTGGTGATGGTGTTAGATTCANNCCATACAGTGCCACTCGTATTC
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -