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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG330
Library VH
(Link to library)
Clone ID VHG330
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHG330P
(Link to Original site)
Representative DNA sequence 
>VHG330 (VHG330Q) /CSM/VH/VHG3-B/VHG330Q.Seq.d/
ATAAATAAAAAAATGTCAACACAACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGC
CAAGCAAATGATTTAATTAAAGTTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGAT
TTATTAAGTGATCGTAGTCAATGGCATTCAAGTTTAGAACAAATTATGTCATTATACGTT
TCATTATGTGCTGAACAATTAGATTATCAATCATTAAGAGATGGTATTCATCATTTCAAA
GTTTCAATCATGTCACAAAAGGAATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAA
ATCATTACACCAATTGAACAAAAAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAAT
CAAGAGAATCCATTAGTTGAACAAAATGAAATCTCACTCATTGATCCACAACAAACTCTC
TTATTCTCTTATATGAAATATTTATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACT
CGTCAAAATACTAAATTTGAACATACTAAATTTGATCATTCTAAATTTGATTCAACTTTA
CTTAAAATTTCAACTCAAGCATTAAATTATTGTTCAAAATATCAAAGAAAACCAGATTTT
ATGGXXXXXXXXXXACCAGTCGTTGAAAGCCTCCAAAAAACTAAAGCCGTCGAAGATAAG
CAATACTTTGAATCAACTCAAGCCGAATTCCTTAAACTCCATCGTGAAGTTCATGACCGT
AATGTCACCGAAAAAGCTCGTCTCAACAGAATCGTACCAGAATATCAAAAATTCACTCAA
GCCGTCATCGAAGAGAGAAAGAAACAATTACCAGCCCTTCAAAAGGAGCAAGAAAAGAGA
TTCCAAGAGTTCCTCATTCAACAAGAACAAGATGTNCCAAGTAGAGAAAGGCAAAGAGAG
AGAAAGNCTCGTATCGCCGCT
sequence update 2002.10.25
Translated Amino Acid sequence 
INKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHSSLEQIMSLYV
SLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVDELKEKIEKEN
QENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEHTKFDHSKFDSTL
LKISTQALNYCSKYQRKPDFM---

---PVVESLQKTKAVEDKQYFESTQAEFLKLHREVHDRNVTEKARLNRIVPEYQKFTQAV
IEERKKQLPALQKEQEKRFQEFLIQQEQDVPSRERQRERKXRIAA
Translated Amino Acid sequence (All Frames) 
Frame A:
INKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHSSLEQIMSLYV
SLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVDELKEKIEKEN
QENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEHTKFDHSKFDSTL
LKISTQALNYCSKYQRKPDFM---

---tsr*kppkn*srrr*ail*inssrip*tps*ss*p*chrksssqqnrtriskihssr
hrreketitspskgarkeiprvphstrtrcxk*rkakrekxsyrr

Frame B:
*ikkcqhnkh*lrlmnml*akqmi*lkldqn*eh*vs*eiy*vivvngiqv*nklchytf
hyvlnn*iinh*emvfiiskfqschkrnsqlyh*kislkkslhqlnkk*tn*krklkkki
krih*lnkmkshslihnklsysli*niylklikq*lkyslvkilnlnilnliilnliqly
lkfqlkh*iivqnikenqilw---

---PVVESLQKTKAVEDKQYFESTQAEFLKLHREVHDRNVTEKARLNRIVPEYQKFTQAV
IEERKKQLPALQKEQEKRFQEFLIQQEQDVPSRERQRERKXRIAA

Frame C:
k*knvnttsissg**tcfkpsk*fn*swikiksikclkrfik*s*smafkfrtnyviirf
imc*tirlsiikrwyssfqsfnhvtkgilnctirkyl*rnhytn*tksrrikren*krks
resis*tk*nlth*sttnslillyeifi*sl*snd*sthssky*i*ty*i*sf*i*fnft
*nfnssikllfkiskktrfy---

---qslkaskklkpskisntlnqlkpnslnsivkfmtvmspkklvstesyqniknslkps
skrernnyqpfkrskkrdsksssfnknkmxqvekgkerexlvsp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ486 (VHQ486Q) /CSM/VH/VHQ4-D/VHQ486Q.Seq.d/                        607   e-172
VHQ255 (VHQ255Q) /CSM/VH/VHQ2-C/VHQ255Q.Seq.d/                        607   e-172
VHP666 (VHP666Q) /CSM/VH/VHP6-C/VHP666Q.Seq.d/                        607   e-172
VHP290 (VHP290Q) /CSM/VH/VHP2-D/VHP290Q.Seq.d/                        607   e-172
VHO837 (VHO837Q) /CSM/VH/VHO8-B/VHO837Q.Seq.d/                        607   e-172
VHO756 (VHO756Q) /CSM/VH/VHO7-C/VHO756Q.Seq.d/                        607   e-172
VHN713 (VHN713Q) /CSM/VH/VHN7-A/VHN713Q.Seq.d/                        607   e-172
VHN263 (VHN263Q) /CSM/VH/VHN2-C/VHN263Q.Seq.d/                        607   e-172
VHM249 (VHM249Q) /CSM/VH/VHM2-C/VHM249Q.Seq.d/                        607   e-172
VHL330 (VHL330Q) /CSM/VH/VHL3-B/VHL330Q.Seq.d/                        607   e-172
own update 2002.12.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...   517   0.0    6
(BJ421654) Dictyostelium discoideum cDNA clone:ddv43l07, 5' ...   557   0.0    2
(BJ422066) Dictyostelium discoideum cDNA clone:ddv44p17, 5' ...   557   0.0    2
(BJ339320) Dictyostelium discoideum cDNA clone:dda64m20, 5' ...   557   0.0    2
(BJ392559) Dictyostelium discoideum cDNA clone:dds28i05, 5' ...   557   0.0    2
(BJ424126) Dictyostelium discoideum cDNA clone:ddv51p07, 5' ...   557   0.0    2
(BJ423355) Dictyostelium discoideum cDNA clone:ddv48m21, 5' ...   557   0.0    2
(BJ393368) Dictyostelium discoideum cDNA clone:dds31h02, 5' ...   557   0.0    2
(BJ365472) Dictyostelium discoideum cDNA clone:ddc35b14, 5' ...   557   0.0    2
(BJ395929) Dictyostelium discoideum cDNA clone:dds40p14, 5' ...   557   0.0    2
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357292_143(FN357292|pid:none) Schistosoma mansoni genome seque...    68   1e-10
FN317268_1(FN317268|pid:none) Schistosoma japonicum isolate Anhu...    64   6e-09
CP001328_373(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    60   8e-08
BC066670_1(BC066670|pid:none) Danio rerio eukaryotic translation...    60   1e-07
BC064926_1(BC064926|pid:none) Homo sapiens eukaryotic translatio...    59   2e-07
BC107776_1(BC107776|pid:none) Homo sapiens eukaryotic translatio...    59   2e-07
BC033769_1(BC033769|pid:none) Homo sapiens eukaryotic translatio...    59   2e-07
BC054342_1(BC054342|pid:none) Homo sapiens eukaryotic translatio...    59   2e-07
D50929_1(D50929|pid:none) Homo sapiens mRNA for KIAA0139 gene, p...    59   2e-07
AK172899_1(AK172899|pid:none) Mus musculus mRNA for mKIAA0139 pr...    59   2e-07
protein update 2009. 7.12
PSORT 

 psg: 0.79  gvh: 0.45  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHG330 is nuc
5' end seq. ID VHG330F
5' end seq. 
>VHG330F.Seq
ATAAATAAAAAAATGTCAACACAACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGC
CAAGCAAATGATTTAATTAAAGTTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGAT
TTATTAAGTGATCGTAGTCAATGGCATTCAAGTTTAGAACAAATTATGTCATTATACGTT
TCATTATGTGCTGAACAATTAGATTATCAATCATTAAGAGATGGTATTCATCATTTCAAA
GTTTCAATCATGTCACAAAAGGAATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAA
ATCATTACACCAATTGAACAAAAAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAAT
CAAGAGAATCCATTAGTTGAACAAAATGAAATCTCACTCATTGATCCACAACAAACTCTC
TTATTCTCTTATATGAAATATTTATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACT
CGTCAAAATACTAAATTTGAACATACTAAATTTGATCATTCTAAATTTGATTCAACTTTA
CTTAAAATTTCAACTCAAGCATTAAATTATTGTTCAAAATATCAAAGAAAACCAGATTTT
ATGGNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID VHG330Z
3' end seq. 
>VHG330Z.Seq
NNNNNNNNNNACCAGTCGTTGAAAGCCTCCAAAAAACTAAAGCCGTCGAAGATAAGCAAT
ACTTTGAATCAACTCAAGCCGAATTCCTTAAACTCCATCGTGAAGTTCATGACCGTAATG
TCACCGAAAAAGCTCGTCTCAACAGAATCGTACCAGAATATCAAAAATTCACTCAAGCCG
TCATCGAAGAGAGAAAGAAACAATTACCAGCCCTTCAAAAGGAGCAAGAAAAGAGATTCC
AAGAGTTCCTCATTCAACAAGAACAAGATGTNCCAAGTAGAGAAAGGCAAAGAGAGAGAA
AGNCTCGTATCGCCGCT
Length of 3' end seq. 317
Connected seq. ID VHG330P
Connected seq. 
>VHG330P.Seq
ATAAATAAAAAAATGTCAACACAACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGC
CAAGCAAATGATTTAATTAAAGTTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGAT
TTATTAAGTGATCGTAGTCAATGGCATTCAAGTTTAGAACAAATTATGTCATTATACGTT
TCATTATGTGCTGAACAATTAGATTATCAATCATTAAGAGATGGTATTCATCATTTCAAA
GTTTCAATCATGTCACAAAAGGAATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAA
ATCATTACACCAATTGAACAAAAAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAAT
CAAGAGAATCCATTAGTTGAACAAAATGAAATCTCACTCATTGATCCACAACAAACTCTC
TTATTCTCTTATATGAAATATTTATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACT
CGTCAAAATACTAAATTTGAACATACTAAATTTGATCATTCTAAATTTGATTCAACTTTA
CTTAAAATTTCAACTCAAGCATTAAATTATTGTTCAAAATATCAAAGAAAACCAGATTTT
ATGG----------ACCAGTCGTTGAAAGCCTCCAAAAAACTAAAGCCGTCGAAGATAAG
CAATACTTTGAATCAACTCAAGCCGAATTCCTTAAACTCCATCGTGAAGTTCATGACCGT
AATGTCACCGAAAAAGCTCGTCTCAACAGAATCGTACCAGAATATCAAAAATTCACTCAA
GCCGTCATCGAAGAGAGAAAGAAACAATTACCAGCCCTTCAAAAGGAGCAAGAAAAGAGA
TTCCAAGAGTTCCTCATTCAACAAGAACAAGATGTNCCAAGTAGAGAAAGGCAAAGAGAG
AGAAAGNCTCGTATCGCCGCT
Length of connected seq. 911
Full length Seq ID -
Full length Seq. -
Length of full length seq. -