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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG320
Library VH
(Link to library)
Clone ID VHG320
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15484-1|Contig-U16583-1
Original site URL
Representative seq. ID VHG320P
(Link to Original site)
Representative DNA sequence 
>VHG320 (VHG320Q) /CSM/VH/VHG3-A/VHG320Q.Seq.d/
CTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAA
GTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGC
AGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTT
TAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTC
TTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATA
AGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGA
CGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGA
CTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAG
TGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATT
CGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTA
CTTTGAAGGXXXXXXXXXXTCCTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTGA
TGTTAAGGGTCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCGA
TCATGCTTCAGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGTT
CGGTAACAGAAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGAT
CACTGGTGTTACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAAT
CAACGTTGCTGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAAA
GATCGTTCGTCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTAA
GGATGAAATTGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTAT
CCAATTAAGATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACGT
CTCNAAAGAAACGTCCTCGAATCCAACTAAATAAATTAAAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
nlgigakd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiil
ihligf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrt
vamevgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNS
SGVVFSADLDGSSKYSKEFTLK---

---SSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNR
KQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVR
RIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSKE
TSSNPTK*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
ltwv*grktnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqtlngwvsf
*ft*ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktag
rwpwksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*i
rvelslvqilmvvaniqknll*r---

---SSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNR
KQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVR
RIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSKE
TSSNPTK*ik

Frame B:
*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tggyhf
nslnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqd
gghgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecef
ewscl*crs*w**qifkriyfe---

---phvksksqkmsplmlrvvqlr*lvhvvpyqnhsimlqsist*lvkkn*lltygsvte
nklpvskpsplslki*slvlpkvtntr*dlsmhisqstllslmvvvllksvislvkrsfv
vlny*mvspvtvtkklrmklf*lvth*nsslnhvllsn*dlplntrmless*mvstsxkk
rpriqlnklk

Frame C:
nlgigakd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiil
ihligf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrt
vamevgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNS
SGVVFSADLDGSSKYSKEFTLK---

---lt*spnprkchr*c*gsfs*gnwstwylikiirscfsryqlsw*krinc*lmvr*qk
tnclyqnhhlyh*kydhwcyqrlriqdeiclctfpnqrcch*wwscc*np*flw*kdrss
y*iirwyhllp*rks*g*ncfnw*lirtplsimcyypikich*iqgc*kvlrwylrlxrn
vlesn*in*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG320 (VHG320Q) /CSM/VH/VHG3-A/VHG320Q.Seq.d/                       2278   0.0
SHG223 (SHG223Q) /CSM/SH/SHG2-A/SHG223Q.Seq.d/                       1207   0.0
VHC345 (VHC345Q) /CSM/VH/VHC3-B/VHC345Q.Seq.d/                       1203   0.0
SHH833 (SHH833Q) /CSM/SH/SHH8-B/SHH833Q.Seq.d/                       1199   0.0
VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/                       1170   0.0
VHE787 (VHE787Q) /CSM/VH/VHE7-D/VHE787Q.Seq.d/                       1162   0.0
VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/                       1154   0.0
VHJ843 (VHJ843Q) /CSM/VH/VHJ8-B/VHJ843Q.Seq.d/                       1152   0.0
AHE287 (AHE287Q) /CSM/AH/AHE2-D/AHE287Q.Seq.d/                       1130   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1110   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X00601) Dictyostelium discoideum ribosomal RNA gene.            1203   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1203   0.0    1
(BJ421563) Dictyostelium discoideum cDNA clone:ddv43h05, 5' ...  1203   0.0    1
(BJ419208) Dictyostelium discoideum cDNA clone:ddv35j11, 5' ...  1203   0.0    1
(BJ394699) Dictyostelium discoideum cDNA clone:dds36m06, 5' ...  1203   0.0    1
(BJ395541) Dictyostelium discoideum cDNA clone:dds39b10, 5' ...  1199   0.0    1
(BJ424189) Dictyostelium discoideum cDNA clone:ddv51m16, 5' ...  1166   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1164   0.0    1
(BJ423760) Dictyostelium discoideum cDNA clone:ddv50f12, 5' ...  1152   0.0    1
(BJ419742) Dictyostelium discoideum cDNA clone:ddv37e06, 5' ...  1150   0.0    1
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000524_1(DQ000524|pid:none) Synthetic construct clone PSF:1065...   209   1e-52
AC119415_28(AC119415|pid:none) Medicago truncatula clone mth2-27...   209   2e-52
DQ214104_1(DQ214104|pid:none) Taeniopygia guttata clone 0061P000...   208   3e-52
DQ214105_1(DQ214105|pid:none) Taeniopygia guttata clone 0058P005...   208   3e-52
(P32969) RecName: Full=60S ribosomal protein L9;  &AB062431_1(AB...   206   1e-51
AY892436_1(AY892436|pid:none) Synthetic construct Homo sapiens c...   206   1e-51
(P51410) RecName: Full=60S ribosomal protein L9;  &AF260271_1(AF...   206   1e-51
(P17077) RecName: Full=60S ribosomal protein L9;  &BC086561_1(BC...   206   1e-51
BT070958_1(BT070958|pid:none) Picea sitchensis clone WS02761_O04...   206   1e-51
(P30707) RecName: Full=60S ribosomal protein L9; AltName: Full=G...   206   1e-51
protein update 2009. 7.12
PSORT 

 psg: 0.89  gvh: 0.42  alm: 0.43  top: 0.33  tms: 0.00  mit: 0.44  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHG320 is mit
5' end seq. ID VHG320F
5' end seq. 
>VHG320F.Seq
CTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAA
GTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGC
AGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTT
TAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTC
TTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATA
AGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGA
CGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGA
CTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAG
TGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATT
CGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTA
CTTTGAAGGNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHG320Z
3' end seq. 
>VHG320Z.Seq
NNNNNNNNNNTCCTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTGATGTTAAGGG
TCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCGATCATGCTTC
AGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGTTCGGTAACAG
AAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGATCACTGGTGT
TACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAATCAACGTTGC
TGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAAAGATCGTTCG
TCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTAAGGATGAAAT
TGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTATCCAATTAAG
ATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACGTCTCNAAAGA
AACGTCCTCGAATCCAACTAAATAAATTAAAGG
Length of 3' end seq. 573
Connected seq. ID VHG320P
Connected seq. 
>VHG320P.Seq
CTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAA
GTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGC
AGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTT
TAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTC
TTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATA
AGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGA
CGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGA
CTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAG
TGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATT
CGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTA
CTTTGAAGG----------TCCTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTGA
TGTTAAGGGTCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCGA
TCATGCTTCAGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGTT
CGGTAACAGAAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGAT
CACTGGTGTTACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAAT
CAACGTTGCTGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAAA
GATCGTTCGTCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTAA
GGATGAAATTGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTAT
CCAATTAAGATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACGT
CTCNAAAGAAACGTCCTCGAATCCAACTAAATAAATTAAAGG
Length of connected seq. 1172
Full length Seq ID -
Full length Seq. -
Length of full length seq. -