VHG292
Library VH
(Link to library)
Clone ID VHG292
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12463-1
Original site URL
Representative seq. ID VHG292P
(Link to Original site)
Representative DNA sequence
>VHG292 (VHG292Q) /CSM/VH/VHG2-D/VHG292Q.Seq.d/
GTGTGATTATTTATCTATTTTTGTGTGTGTGTTTTTTTGTGAAATAACTTTAATTCAACA
GCAATAAAAATAAATTAATAATAATAACCAAAAAAGAAAAAAAAAAXXXXXXXXXXGGTC
GTACTGCTCGTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCACTGATAATGATCGTA
AACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATCAAGATCTGTTTCAC
AAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAATTAACAGAAGATATTAAATCAA
TTGTTAGAGAAGAAATGAAAGAAGCAGATTTAAGAAAAGCAGAGAAAACATTAGATAAAG
CAGAGAAAATCATTTCAAATGCTGATGCAAATGTTGAAACACCAAAAGTTTGGTATAAAA
CAAAACAAGAAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAATAACATTGTTAATC
CAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAATGTACCATCAATTA
AAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTATCTAGAAAACAAAGAAGACATA
GACAATTTAAAGAAGAGTTTGAACGT
sequence update 2002.10.25
Translated Amino Acid sequence
viiylflcvcffvk*l*FNSNKNKLIIITKKEKK---

---GRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTE
DIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWYKTKQEEDKSKELWKIEN
NIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQRRHRQFKEEFER


Translated Amino Acid sequence (All Frames)
Frame A:
v*lfiyfcvcvfl*nnfnstaikin****pkkkkk---

---GRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTE
DIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWYKTKQEEDKSKELWKIEN
NIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQRRHRQFKEEFER

Frame B:
cdylsifvcvffceitliqqq*k*innnnqkrkkk---

---vvllvlvwmvnlallslimivns*killqkqeikqnqdlfhkim*isgeielkn*qk
ilnqllekk*kkqi*ekqrkh*ikqrksfqmlmqmlkhqkfgikqnkkkinqksygrlki
tlliqvkn*rhqsmlpv*imyhqlkn*nkrkihtmvylenkedidnlkksln

Frame C:
viiylflcvcffvk*l*FNSNKNKLIIITKKEKK---

---sycscwygw*illfyh***s*tlkrycykskk*skikicftr*ckflek*n*rinrr
y*inc*rrnersrfkksrenir*srenhfkc*ckc*ntkslv*nktrrr*ikrvmed*k*
hc*sr*kikgtnrcyrck*ctin*kiktkersilwfi*ktkkt*ti*rrv*t

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG292 (VHG292Q) /CSM/VH/VHG2-D/VHG292Q.Seq.d/ 1011 0.0
AHF536 (AHF536Q) /CSM/AH/AHF5-B/AHF536Q.Seq.d/ 1011 0.0
VHC552 (VHC552Q) /CSM/VH/VHC5-C/VHC552Q.Seq.d/ 1003 0.0
VHE367 (VHE367Q) /CSM/VH/VHE3-C/VHE367Q.Seq.d/ 932 0.0
VHL131 (VHL131Q) /CSM/VH/VHL1-B/VHL131Q.Seq.d/ 924 0.0
VHI651 (VHI651Q) /CSM/VH/VHI6-C/VHI651Q.Seq.d/ 40 0.040
VSF216 (VSF216Q) /CSM/VS/VSF2-A/VSF216Q.Seq.d/ 38 0.16
VSB141 (VSB141Q) /CSM/VS/VSB1-B/VSB141Q.Seq.d/ 38 0.16
VHJ604 (VHJ604Q) /CSM/VH/VHJ6-A/VHJ604Q.Seq.d/ 38 0.16
SSG521 (SSG521Q) /CSM/SS/SSG5-A/SSG521Q.Seq.d/ 38 0.16

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ440483) Dictyostelium discoideum cDNA clone:ddv43g24, 3' ... 509 0.0 2
(BJ351181) Dictyostelium discoideum cDNA clone:dda42g09, 3' ... 509 0.0 2
(BJ438165) Dictyostelium discoideum cDNA clone:ddv36g13, 3' ... 502 0.0 2
(BJ443586) Dictyostelium discoideum cDNA clone:ddv53m07, 3' ... 509 0.0 2
(BJ439142) Dictyostelium discoideum cDNA clone:ddv39f17, 3' ... 509 0.0 2
(BJ424737) Dictyostelium discoideum cDNA clone:ddv53m07, 5' ... 42 4e-04 2
(BJ421785) Dictyostelium discoideum cDNA clone:ddv43g24, 5' ... 42 4e-04 2
(CF181845) ISO1D7F Iso cDNA Isotricha sp. BBF-2003 cDNA simi... 38 0.001 3
(BV255991) S235P6260RB9.T0 ItalianGreyhound Canis familiaris... 52 0.024 1
(CU928594) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.024 1
dna update 2008.11. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54TJ4) RecName: Full=Probable ATP-dependent RNA helicase ddx27... 341 9e-93
(Q0INC5) RecName: Full=DEAD-box ATP-dependent RNA helicase 28; ... 94 4e-18
AC147407_28(AC147407|pid:none) Medicago truncatula clone mth2-15... 92 9e-18
AK319072_1(AK319072|pid:none) Arabidopsis thaliana AT4G16630 mRN... 86 1e-15
(Q9ZRZ8) RecName: Full=DEAD-box ATP-dependent RNA helicase 28; ... 86 1e-15
AK316860_1(AK316860|pid:none) Arabidopsis thaliana AT4G16630 mRN... 86 1e-15
BC088338_1(BC088338|pid:none) Rattus norvegicus DEAD (Asp-Glu-Al... 83 7e-15
BC011321_1(BC011321|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 83 7e-15
(Q921N6) RecName: Full=Probable ATP-dependent RNA helicase DDX27... 83 7e-15
AY648729_1(AY648729|pid:none) Danio rerio DEAD box polypeptide 2... 81 2e-14
protein update 2009. 7.11
PSORT

psg: 0.63 gvh: 0.26 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.29 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for VHG292 is nuc

5' end seq. ID VHG292F
5' end seq.
>VHG292F.Seq
GTGTGATTATTTATCTATTTTTGTGTGTGTGTTTTTTTGTGAAATAACTTTAATTCAACA
GCAATAAAAATAAATTAATAATAATAACCAAAAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID VHG292Z
3' end seq.
>VHG292Z.Seq
NNNNNNNNNNGGTCGTACTGCTCGTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCAC
TGATAATGATCGTAAACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATC
AAGATCTGTTTCACAAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAATTAACAGA
AGATATTAAATCAATTGTTAGAGAAGAAATGAAAGAAGCAGATTTAAGAAAAGCAGAGAA
AACATTAGATAAAGCAGAGAAAATCATTTCAAATGCTGATGCAAATGTTGAAACACCAAA
AGTTTGGTATAAAACAAAACAAGAAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAA
TAACATTGTTAATCCAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAA
TGTACCATCAATTAAAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTATCTAGAAA
ACAAAGAAGACATAGACAATTTAAAGAAGAGTTTGAACGT
Length of 3' end seq. 520
Connected seq. ID VHG292P
Connected seq.
>VHG292P.Seq
GTGTGATTATTTATCTATTTTTGTGTGTGTGTTTTTTTGTGAAATAACTTTAATTCAACA
GCAATAAAAATAAATTAATAATAATAACCAAAAAAGAAAAAAAAAA----------GGTC
GTACTGCTCGTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCACTGATAATGATCGTA
AACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATCAAGATCTGTTTCAC
AAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAATTAACAGAAGATATTAAATCAA
TTGTTAGAGAAGAAATGAAAGAAGCAGATTTAAGAAAAGCAGAGAAAACATTAGATAAAG
CAGAGAAAATCATTTCAAATGCTGATGCAAATGTTGAAACACCAAAAGTTTGGTATAAAA
CAAAACAAGAAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAATAACATTGTTAATC
CAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAATGTACCATCAATTA
AAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTATCTAGAAAACAAAGAAGACATA
GACAATTTAAAGAAGAGTTTGAACGT
Length of connected seq. 616
Full length Seq ID -
Full length Seq. -
Length of full length seq. -