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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG264
Library VH
(Link to library)
Clone ID VHG264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12346-1
Original site URL
Representative seq. ID VHG264P
(Link to Original site)
Representative DNA sequence 
>VHG264 (VHG264Q) /CSM/VH/VHG2-C/VHG264Q.Seq.d/
CCGTGGGGGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAA
AACTATACGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGA
AAGAATTGACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTAC
AAAAGCATATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATA
TGCAGAGGAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAA
GAGAAAGAAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAAT
TGATTTGTTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATC
ATTTTATGAAGTATTTACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAAT
AAAGGAACAAGAGGAAGCAGTAAAAAAAAAAXXXXXXXXXXGCCAGTGGGGGTGGTAGTT
ATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATACGTTCTTCAA
TGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATTGACTTTTATG
AATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCATATTATAAAT
TAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAGGAAATGTTTA
AAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAGAAATATGATG
AATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTGTTTAGAATGA
TATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTATGAAGTATTTA
CAAAACAAGCAAAGGGAAACACCAACNCCAGAGGATCAAATAAAGGNAACAAGNAGGAAG
CA
sequence update 2002.10.25
Translated Amino Acid sequence 
RGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERIDFYELLGVPSTATKNEIT
KAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRKKYDEYGLDSVNEMDIDPI
DLFRMIFGGGLFQNYFGDLSFYEVFTKQANGETPTPEDQIKEQEEAVKKK---

---ASGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERIDFYELLGVPSTATK
NEITKAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRKKYDEYGLDSVNEMD
IDPIDLFRMIFGGGLFQNYFGDLSFYEVFTKQAKGNTNXRGSNKGNKXEA
Translated Amino Acid sequence (All Frames) 
Frame A:
pwgw*lckll*kk*fcrks*nytffnasisktip*nci*rkn*ll*iigctihsnke*ny
ksil*iskrissr*kqk*ficrgnv*ks**sifsfi**r*ekei**iwfrfs**ngy*sn
*fv*ndiwwwiisklfwrfiil*siyktskw*ntnsrgsnkgtrgsskkk---

---ASGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERIDFYELLGVPSTATK
NEITKAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRKKYDEYGLDSVNEMD
IDPIDLFRMIFGGGLFQNYFGDLSFYEVFTKQAKGNTNXRGSNKGNKXEA

Frame B:
RGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERIDFYELLGVPSTATKNEIT
KAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRKKYDEYGLDSVNEMDIDPI
DLFRMIFGGGLFQNYFGDLSFYEVFTKQANGETPTPEDQIKEQEEAVKKK---

---pvgvvvmqvalkkvil*kelklyvlqckh*qnhpmklyikkeltfmnywvyhpqqqr
mklqkhiin*qkniiqiktkmiymqrkclkklvkhiqfylmkirernmmnmv*iqlmkwi
liqlicle*ylvvdyfkiileiyhfmkylqnkqretptpedqikxtxrk

Frame C:
vgvvvmqvalkkvil*kelklyvlqckh*qnhpmklyikkeltfmnywvyhpqqqrmklq
khiin*qkniiqiktkmiymqrkclkklvkhiqfylmkirernmmnmv*iqlmkwiliql
icle*ylvvdyfkiileiyhfmkylqnkqmvkhqlqrik*rnkrkq*kk---

---qwgw*lckll*kk*fcrks*nytffnasisktip*nci*rkn*ll*iigctihsnke
*nyksil*iskrissr*kqk*ficrgnv*ks**sifsfi**r*ekei**iwfrfs**ngy
*sn*fv*ndiwwwiisklfwrfiil*siyktskgkhqxqrik*rxqxgs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG264 (VHG264Q) /CSM/VH/VHG2-C/VHG264Q.Seq.d/                        993   0.0
AFJ269 (AFJ269Q) /CSM/AF/AFJ2-C/AFJ269Q.Seq.d/                        989   0.0
CFC472 (CFC472Q) /CSM/CF/CFC4-C/CFC472Q.Seq.d/                        983   0.0
CHE470 (CHE470Q) /CSM/CH/CHE4-C/CHE470Q.Seq.d/                        926   0.0
SFJ604 (SFJ604Q) /CSM/SF/SFJ6-A/SFJ604Q.Seq.d/                        896   0.0
CFG251 (CFG251Q) /CSM/CF/CFG2-C/CFG251Q.Seq.d/                        892   0.0
AFE467 (AFE467Q) /CSM/AF/AFE4-C/AFE467Q.Seq.d/                        835   0.0
AFO639 (AFO639Q) /CSM/AF/AFO6-B/AFO639Q.Seq.d/                        787   0.0
AFN178 (AFN178Q) /CSM/AF/AFN1-D/AFN178Q.Seq.d/                        787   0.0
AFD592 (AFD592Q) /CSM/AF/AFD5-D/AFD592Q.Seq.d/                        781   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421748) Dictyostelium discoideum cDNA clone:ddv43o16, 5' ...   993   0.0    1
(BJ440441) Dictyostelium discoideum cDNA clone:ddv43o16, 3' ...   973   0.0    1
(BJ359246) Dictyostelium discoideum cDNA clone:ddc13e14, 5' ...   892   0.0    1
(BJ389791) Dictyostelium discoideum cDNA clone:dds20g02, 5' ...   583   0.0    2
(BJ325077) Dictyostelium discoideum cDNA clone:dda9f18, 5' e...   835   0.0    1
(BJ360362) Dictyostelium discoideum cDNA clone:ddc5p18, 5' e...   827   0.0    1
(BJ330250) Dictyostelium discoideum cDNA clone:dda27k19, 5' ...   787   0.0    1
(BJ329007) Dictyostelium discoideum cDNA clone:dda30m10, 5' ...   787   0.0    1
(BJ324947) Dictyostelium discoideum cDNA clone:dda8g23, 5' e...   781   0.0    1
(BJ326793) Dictyostelium discoideum cDNA clone:dda18e01, 5' ...   771   0.0    1
dna update 2008.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX072555_2(BX072555|pid:none) Zebrafish DNA sequence from clone ...   101   4e-20
BC055555_1(BC055555|pid:none) Danio rerio DnaJ (Hsp40) homolog, ...   101   4e-20
AL845363_2(AL845363|pid:none) Zebrafish DNA sequence from clone ...   101   4e-20
CP000975_2247(CP000975|pid:none) Methylacidiphilum infernorum V4...   101   4e-20
AF325535_1(AF325535|pid:none) Mus musculus tumorous imaginal dis...   101   5e-20
AK004575_1(AK004575|pid:none) Mus musculus adult male lung cDNA,...   101   5e-20
CP001098_1266(CP001098|pid:none) Halothermothrix orenii H 168, c...   101   5e-20
BC003920_1(BC003920|pid:none) Mus musculus DnaJ (Hsp40) homolog,...   101   5e-20
BC161074_1(BC161074|pid:none) Xenopus tropicalis hypothetical pr...   101   5e-20
(Q99M87) RecName: Full=DnaJ homolog subfamily A member 3, mitoch...   101   5e-20
protein update 2009. 7.11
PSORT 

 psg: 0.44  gvh: 0.39  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHG264 is cyt
5' end seq. ID VHG264F
5' end seq. 
>VHG264F.Seq
CCGTGGGGGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAA
AACTATACGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGA
AAGAATTGACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTAC
AAAAGCATATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATA
TGCAGAGGAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAA
GAGAAAGAAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAAT
TGATTTGTTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATC
ATTTTATGAAGTATTTACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAAT
AAAGGAACAAGAGGAAGCAGTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 521
3' end seq. ID VHG264Z
3' end seq. 
>VHG264Z.Seq
NNNNNNNNNNGCCAGTGGGGGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGT
AGAAAGAGCTAAAACTATACGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAAC
TGTATATAAAGAAAGAATTGACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAA
GAATGAAATTACAAAAGCATATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAA
AAATGATTTATATGCAGAGGAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATC
TGATGAAGATAAGAGAAAGAAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGA
TATTGATCCAATTGATTTGTTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTT
TGGAGATTTATCATTTTATGAAGTATTTACAAAACAAGCAAAGGGAAACACCAACNCCAG
AGGATCAAATAAAGGNAACAAGNAGGAAGCA
Length of 3' end seq. 511
Connected seq. ID VHG264P
Connected seq. 
>VHG264P.Seq
CCGTGGGGGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAA
AACTATACGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGA
AAGAATTGACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTAC
AAAAGCATATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATA
TGCAGAGGAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAA
GAGAAAGAAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAAT
TGATTTGTTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATC
ATTTTATGAAGTATTTACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAAT
AAAGGAACAAGAGGAAGCAGTAAAAAAAAAA----------GCCAGTGGGGGTGGTAGTT
ATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATACGTTCTTCAA
TGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATTGACTTTTATG
AATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCATATTATAAAT
TAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAGGAAATGTTTA
AAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAGAAATATGATG
AATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTGTTTAGAATGA
TATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTATGAAGTATTTA
CAAAACAAGCAAAGGGAAACACCAACNCCAGAGGATCAAATAAAGGNAACAAGNAGGAAG
CA
Length of connected seq. 1012
Full length Seq ID -
Full length Seq. -
Length of full length seq. -