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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG230
Library VH
(Link to library)
Clone ID VHG230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15069-1
Original site URL
Representative seq. ID VHG230P
(Link to Original site)
Representative DNA sequence 
>VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/
AAAACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTG
TCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATG
CCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTA
TCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCA
ACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCT
ACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCT
CAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAA
CTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCG
TTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTG
CCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAAT
AAAAAGAATTGATTCAATTTTTTTTTGTACCTTTGTAAAAAAAAAAAXXXXXXXXXXCAG
AAAACCCACGTGTNTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTA
TGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTG
GTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATC
GTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTG
GTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTC
AAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCT
GTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAG
GTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAAC
CAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAATA
ATTAATAATAATAAAAAGAATNATTCAATTTTTTTTTG
sequence update 2002.10.25
Translated Amino Acid sequence 
khkiikndnc*tnlprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmyw*kry
r*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfrsrytl
ngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyqtsrhc
qlwstlnyqhiafl**LIIIKRIDSIFFCTFVKKK---

---ENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGS
SFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQ
FFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL*iini*l
fynn****kexfnffl
Translated Amino Acid sequence (All Frames) 
Frame A:
kt*nn*k*qllnqppqkthvsslispsvvlkpvk*lwnymptlsqrllktselyvlvkkv
svnqanhyhtkdhlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhs
qwptlvptpmvhnslsvllqlig*tvntlysvlslkvwmslkrwkllvhnqvklpnqssl
ptvvnfklstysffiiinnnkkn*fnfflylckkk---

---qkthvxslispsvvlkpvk*lwnymptlsqrllktselyvlvkkvsvnqanhyhtkd
hlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhsqwptlvptpmvh
nslsvllqlig*tvntlysvlslkvwmslkrwkllvhnqvklpnqsslptvvnfklstys
ffiiinnnkknxsiff

Frame B:
khkiikndnc*tnlprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmyw*kry
r*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfrsrytl
ngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyqtsrhc
qlwstlnyqhiafl**LIIIKRIDSIFFCTFVKKK---

---rkptcxl*yhhrwc*sr*ssygiicqhcpkdc*klqsfmyw*kryr*irqtiiiqri
ifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfrsrytlngqrwcqhqwft
ilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyqtsrhcqlwstlnyqhia
fl**liiikrxiqfff

Frame C:
nik*lkmttvkptspenprvffditiggveagkvvmelyantvpktaenfralctgekgi
gksgkplsykgssfhrvitnfmcqggdftmgngtggesiygnkfadenfklkhfgqgtls
managantngsqfficvaptdwldgkhvvfgfvtegmdvvkkmeaagsqsgkttkpvvia
ncgql*iini*lfynn****keliqfffvpl*kkk---

---ENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGS
SFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQ
FFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL*iini*l
fynn****kexfnffl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/                       1223   0.0
VHF401 (VHF401Q) /CSM/VH/VHF4-A/VHF401Q.Seq.d/                       1223   0.0
SSK338 (SSK338Q) /CSM/SS/SSK3-B/SSK338Q.Seq.d/                       1223   0.0
SSK846 (SSK846Q) /CSM/SS/SSK8-B/SSK846Q.Seq.d/                       1209   0.0
CHN256 (CHN256Q) /CSM/CH/CHN2-C/CHN256Q.Seq.d/                       1209   0.0
VSD755 (VSD755Q) /CSM/VS/VSD7-C/VSD755Q.Seq.d/                       1207   0.0
SLK488 (SLK488Q) /CSM/SL/SLK4-D/SLK488Q.Seq.d/                       1205   0.0
SSD343 (SSD343Q) /CSM/SS/SSD3-B/SSD343Q.Seq.d/                       1203   0.0
CHQ217 (CHQ217Q) /CSM/CH/CHQ2-A/CHQ217Q.Seq.d/                       1193   0.0
VSJ435 (VSJ435Q) /CSM/VS/VSJ4-B/VSJ435Q.Seq.d/                       1187   0.0
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421649) Dictyostelium discoideum cDNA clone:ddv43k08, 5' ...  1223   0.0    1
(BJ421187) Dictyostelium discoideum cDNA clone:ddv41b02, 5' ...  1223   0.0    1
(C94332) Dictyostelium discoideum slug cDNA, clone SSK846.       1209   0.0    1
(BJ384229) Dictyostelium discoideum cDNA clone:ddc48o14, 3' ...  1209   0.0    1
(AU264524) Dictyostelium discoideum vegetative cDNA clone:VS...  1207   0.0    1
(C92284) Dictyostelium discoideum slug cDNA, clone SSD343.       1203   0.0    1
(BJ382936) Dictyostelium discoideum cDNA clone:ddc46i07, 3' ...  1201   0.0    1
(BJ385148) Dictyostelium discoideum cDNA clone:ddc54a06, 3' ...  1193   0.0    1
(AU269911) Dictyostelium discoideum vegetative cDNA clone:VS...  1187   0.0    1
(AU264673) Dictyostelium discoideum vegetative cDNA clone:VS...  1172   0.0    1
dna update 2008.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47812_1(U47812|pid:none) Onchocerca volvulus cyclophilin Ovcyp-...   255   3e-66
EU401723_1(EU401723|pid:none) Capsicum annuum cyclophilin mRNA, ...   253   1e-65
EU126917_1(EU126917|pid:none) Gerbera hybrid cultivar cyclophili...   252   2e-65
EU284859_1(EU284859|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   251   5e-65
AF020434_1(AF020434|pid:none) Arabidopsis thaliana cyclophilin (...   250   6e-65
AF126551_1(AF126551|pid:none) Solanum tuberosum subsp. tuberosum...   250   8e-65
EF144376_1(EF144376|pid:none) Populus trichocarpa clone PX0019_B...   250   8e-65
FB823121_1(FB823121|pid:none) Sequence 42394 from Patent WO20080...   250   8e-65
EF122402_1(EF122402|pid:none) Citrus cv. Shiranuhi putative cycl...   250   8e-65
CSTO(A39252)peptidylprolyl isomerase (EC 5.2.1.8) - tomato            249   1e-64
protein update 2009. 7.11
PSORT 

 psg: 0.97  gvh: 0.50  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHG230 is nuc
5' end seq. ID VHG230F
5' end seq. 
>VHG230F.Seq
AAAACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTG
TCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATG
CCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTA
TCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCA
ACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCT
ACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCT
CAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAA
CTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCG
TTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTG
CCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAAT
AAAAAGAATTGATTCAATTTTTTTTTGTACCTTTGTAAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 657
3' end seq. ID VHG230Z
3' end seq. 
>VHG230Z.Seq
NNNNNNNNNNCAGAAAACCCACGTGTNTTCTTTGATATCACCATCGGTGGTGTTGAAGCC
GGTAAAGTAGTTATGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGA
GCTTTATGTACTGGTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGA
TCATCTTTCCATCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGT
AATGGTACTGGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTA
AAACATTTCGGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCA
CAATTCTTTATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGT
TTTGTCACTGAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGT
AAAACTACCAAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAG
CTTTTTTATAATAATTAATAATAATAAAAAGAATNATTCAATTTTTTTTTG
Length of 3' end seq. 591
Connected seq. ID VHG230P
Connected seq. 
>VHG230P.Seq
AAAACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTG
TCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATG
CCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTA
TCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCA
ACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCT
ACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCT
CAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAA
CTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTCG
TTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATTG
CCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAATAATTAATAATAAT
AAAAAGAATTGATTCAATTTTTTTTTGTACCTTTGTAAAAAAAAAAA----------CAG
AAAACCCACGTGTNTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTA
TGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTG
GTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATC
GTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTG
GTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTC
AAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCT
GTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAG
GTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAAC
CAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAATA
ATTAATAATAATAAAAAGAATNATTCAATTTTTTTTTG
Length of connected seq. 1228
Full length Seq ID -
Full length Seq. -
Length of full length seq. -