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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG208
Library VH
(Link to library)
Clone ID VHG208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16299-1
Original site URL
Representative seq. ID VHG208P
(Link to Original site)
Representative DNA sequence 
>VHG208 (VHG208Q) /CSM/VH/VHG2-A/VHG208Q.Seq.d/
AAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTC
GCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTA
ATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAA
TTAGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAA
ACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAA
TTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATT
GCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGA
ACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGT
GGTGATATTTTTGGTCAAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCA
CCAAAGGAAATGGGTACCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCAT
GCACTTTTAACCATTGAATTCGATGGTAAACGTAAACAATTAACTATGXXXXXXXXXXTT
AGCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCA
AGCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGC
CAAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGA
TTCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTT
CCTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTG
GATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTAC
CGCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAG
AATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTT
CTCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTAGTGATTTAGTTTAAAA
TAAATGATATTAATAAAAAATAATATAAATATATAATAGTAAATAAAAAAATAAAAAAAG
TAATCTAAACCAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
knfl*HKTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVGHNQ
LVGEIIRLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPLNAI
AEITKGIYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENNLIIHKIMVP
PKEMGTIVEIAPAGEYTLDHALLTIEFDGKRKQLTM---

---LAQRKHFPSINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQL
VGQDSLGESEKITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAV
ESSTADNKVTWNQIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSD
LV*nk*y**kii*iynsk*knkksnlnq
Translated Amino Acid sequence (All Frames) 
Frame A:
knfl*HKTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVGHNQ
LVGEIIRLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPLNAI
AEITKGIYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENNLIIHKIMVP
PKEMGTIVEIAPAGEYTLDHALLTIEFDGKRKQLTM---

---LAQRKHFPSINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQL
VGQDSLGESEKITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAV
ESSTADNKVTWNQIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSD
LV*nk*y**kii*iynsk*knkksnlnq

Frame B:
ktfcnikhtkcqkiqvyhhslqlkliihkvlyyqyqvqs*llin*lvllctswfv*vtin
*lvklld*kkilpqfkftkkllv*llviqy*elinh*qln*vqvl*iiflmvfnvh*mql
qrlqkvfifqevlilhh*iellnghinqipn*klvtmlvvviflvkllkii*ssirlwfh
qrkwvps*rlhqlvntlwimhf*plnsmvnvnn*l---

---*hnvnishpsig*flspnickllilimikwiqnsfhsvpeprkffkwkkislkssnw
svkil*vnlkrlplkslvlfvmisfnkmvslhtinvvhssrpfgc*ri**lsti*hkkll
nqvpliikllgiklkmn*kksftellq*nskiqltvnkl*llisqlsmkislllsetlvi
*fkindinkk*ykyiivnkkikkvi*tk

Frame C:
klfvt*niqnvkkfrftiirfn*s**ftrfciisirssrnc*siswccyvrvgscrsqsi
sw*ny*irrrychnsslrrnfwfncw*ssikns*tins*irsryye*yf*wystsikcnc
rdykrylyskry*ysiik*ny*maistryqiksw*qc*ww*yfwssc*k*fnhp*dygst
kgngyhrrdctsw*ihfgsctfnh*irw*t*tiny---

---stt*tfpihqlvnfflqiyass*ysl*sngsrirstpyqsqgnssngrrsl*nrpig
rsrffr*i*kdyh*srsyys**fpstkwflsir*mlsilqdrldvkeyddflqfstksc*
ikyr***sylesn*k*ikrnhsqnyfneiprsn*r*tnfncsflnsq*ryhycfqkl**f
slk*miliknnini***ikk*kk*skpk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG208 (VHG208Q) /CSM/VH/VHG2-A/VHG208Q.Seq.d/                       2309   0.0
VHL626 (VHL626Q) /CSM/VH/VHL6-B/VHL626Q.Seq.d/                       1283   0.0
VHN460 (VHN460Q) /CSM/VH/VHN4-C/VHN460Q.Seq.d/                       1243   0.0
VFC688 (VFC688Q) /CSM/VF/VFC6-D/VFC688Q.Seq.d/                       1223   0.0
VFC742 (VFC742Q) /CSM/VF/VFC7-B/VFC742Q.Seq.d/                       1197   0.0
VHK790 (VHK790Q) /CSM/VH/VHK7-D/VHK790Q.Seq.d/                       1195   0.0
VFF319 (VFF319Q) /CSM/VF/VFF3-A/VFF319Q.Seq.d/                       1189   0.0
VHE538 (VHE538Q) /CSM/VH/VHE5-B/VHE538Q.Seq.d/                       1183   0.0
VHD171 (VHD171Q) /CSM/VH/VHD1-C/VHD171Q.Seq.d/                       1172   0.0
VFM694 (VFM694Q) /CSM/VF/VFM6-D/VFM694Q.Seq.d/                       1164   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421593) Dictyostelium discoideum cDNA clone:ddv43o02, 5' ...  1283   0.0    1
(BJ424991) Dictyostelium discoideum cDNA clone:ddv54c08, 5' ...  1281   0.0    1
(BJ425941) Dictyostelium discoideum cDNA clone:ddv57h16, 5' ...  1243   0.0    1
(U49169) Dictyostelium discoideum V-ATPase A subunit (vatA) ...  1227   0.0    1
(BJ411909) Dictyostelium discoideum cDNA clone:ddv6d11, 5' e...  1197   0.0    1
(BJ424538) Dictyostelium discoideum cDNA clone:ddv52d23, 5' ...  1195   0.0    1
(BJ410060) Dictyostelium discoideum cDNA clone:ddv11f05, 5' ...  1189   0.0    1
(BJ420770) Dictyostelium discoideum cDNA clone:ddv40k09, 5' ...  1183   0.0    1
(BJ419930) Dictyostelium discoideum cDNA clone:ddv37m17, 5' ...  1172   0.0    1
(BJ416587) Dictyostelium discoideum cDNA clone:ddv26k24, 5' ...  1164   0.0    1
dna update 2008.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;...   410   e-113
BC044025_1(BC044025|pid:none) Xenopus laevis ATPase, H+ transpor...   263   1e-68
AB250091_1(AB250091|pid:none) Rana catesbeiana VHA-A mRNA for va...   259   1e-67
AB093512_1(AB093512|pid:none) Saccharomyces pastorianus VMA1 gen...   256   9e-67
AB093514_1(AB093514|pid:none) Saccharomyces pastorianus VMA1 gen...   256   9e-67
(P17255) RecName: Full=V-type proton ATPase catalytic subunit A;...   255   2e-66
AB093513_1(AB093513|pid:none) Saccharomyces pastorianus VMA1 gen...   255   2e-66
AB093497_1(AB093497|pid:none) Saccharomyces cerevisiae VMA1 gene...   254   5e-66
AB093496_1(AB093496|pid:none) Saccharomyces cerevisiae VMA1 gene...   254   5e-66
AB369668_1(AB369668|pid:none) Oreochromis mossambicus V-ATPaseA ...   253   8e-66
protein update 2009. 7.11
PSORT 

 psg: 0.87  gvh: 0.58  alm: 0.38  top: 0.23  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHG208 is exc
5' end seq. ID VHG208F
5' end seq. 
>VHG208F.Seq
AAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTC
GCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTA
ATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAA
TTAGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAA
ACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAA
TTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATT
GCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGA
ACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGT
GGTGATATTTTTGGTCAAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCA
CCAAAGGAAATGGGTACCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCAT
GCACTTTTAACCATTGAATTCGATGGTAAACGTAAACAATTAACTATGNNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID VHG208Z
3' end seq. 
>VHG208Z.Seq
NNNNNNNNNNTTAGCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTC
CAAATATATGCAAGCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTCCACT
CCGTACCAGAGCCAAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATT
GGTCGGTCAAGATTCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTAT
TCGTGATGATTTCCTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTT
CAAGACCGTTTGGATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGT
TGAATCAAGTACCGCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGA
AATCATTCACAGAATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAACTTT
AACTGCTCATTTCTCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTAGTGA
TTTAGTTTAAAATAAATGATATTAATAAAAAATAATATAAATATATAATAGTAAATAAAA
AAATAAAAAAAGTAATCTAAACCAAAA
Length of 3' end seq. 627
Connected seq. ID VHG208P
Connected seq. 
>VHG208P.Seq
AAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTC
GCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTA
ATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAA
TTAGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAA
ACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAA
TTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATT
GCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGA
ACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGT
GGTGATATTTTTGGTCAAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCA
CCAAAGGAAATGGGTACCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCAT
GCACTTTTAACCATTGAATTCGATGGTAAACGTAAACAATTAACTATG----------TT
AGCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCA
AGCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGC
CAAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGA
TTCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTT
CCTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTG
GATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTAC
CGCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAG
AATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTT
CTCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTAGTGATTTAGTTTAAAA
TAAATGATATTAATAAAAAATAATATAAATATATAATAGTAAATAAAAAAATAAAAAAAG
TAATCTAAACCAAAA
Length of connected seq. 1265
Full length Seq ID -
Full length Seq. -
Length of full length seq. -