NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG193
Library VH
(Link to library)
Clone ID VHG193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11297-1
Original site URL
Representative seq. ID VHG193P
(Link to Original site)
Representative DNA sequence 
>VHG193 (VHG193Q) /CSM/VH/VHG1-D/VHG193Q.Seq.d/
AGAGATGCTACAAATTTATTGACAGTTGGTGAAATGTCATTGAAAGCTGGTACTAGACCA
TCAACCGAAGATGAGATCATTGATCTTCTTCCACATGATGAAGAGGTCCGTGAAGAACAT
GAAGATGATTTAGTCGATGATGAAAAGGTTGTTGCAACCACCAATGAAGAAGAACCATCT
CAAGAAGTTGAAGAATCTGAACCAGCTCCAGATATTGAAGATCCATTTGCAATTAACAAA
GATTTCTTTGATAAGAATGGTAGATTCCTTTTATCTGATAAAATTGAAGCTGAAGAACAA
GAACAAGAGGATTTGATTAAAGATGATGATGTCGCAATTGAAAATGTTGAATCTCTTATC
ACTGAAGAGTCTGTTCCAATTGCAGTTGAAGAGTCTGTAACAACTGTAGTTGAAGAGTCT
GTAACAAAGCCTCCAAAATTCTTAGAAAGATTCGCTGAAAAAGGAAAATTACCACCAATC
AGAAATAGCAATAAAGACAGTGTTAGACAAATCGCAGAATCATTGTTTAACATTAATTTC
GACTATCAAGAGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATGCATTCCAT
GAAAACCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGXXXXXXXX
XXACCTTCAACAAGGTAAGAATCAAGAATGGTTTAGACCTGAAAAAATCAGTGATAAAGA
TATCACCTCACTTGAACGTCGTCAAACTTGGTATCCAAGACAACACATCAAAACTTATCC
ATTCGAATTCATTAGCTCTCACAATACCACCGATCAAACTATTGAAGATAGTTGGGTCAA
TAGAAAAGCCGTATTAAAAGTTAACATCTCTGCTTTCAATTTATCAAAGACCGTTCAAGA
TAGATTAGCTCAATTAACCGCTAATCGTTATGACCCACAAAAGAAAGTACTCACTTTGGT
CGCCAACAATCACAAAACACTTCCAGAAAATAAATATGAAGTTAAGAGATTATTCAAAGA
ATTATTACATGAAGCAAGTTTAGCTGATCCAAATTTCGTCTCTGTTAGAACTGATAACTA
TAAAGCTCCACAACCACAATCCTTTGTACCTTCTCAAGCCGCTAAAAATCAAACTAGATT
CAATCTCTATCGTTTACAAGGTTTCCCACTTTTAGATAATCAACAAAGACAACATATGGA
ACTTTATTCACATATAAGATCACATTTAGATTCAACTTATAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
RDATNLLTVGEMSLKAGTRPSTEDEIIDLLPHDEEVREEHEDDLVDDEKVVATTNEEEPS
QEVEESEPAPDIEDPFAINKDFFDKNGRFLLSDKIEAEEQEQEDLIKDDDVAIENVESLI
TEESVPIAVEESVTTVVEESVTKPPKFLERFAEKGKLPPIRNSNKDSVRQIAESLFNINF
DYQEELDEIDGRMDAIDAFHENQEELPLDEREGELDE---

---LQQGKNQEWFRPEKISDKDITSLERRQTWYPRQHIKTYPFEFISSHNTTDQTIEDSW
VNRKAVLKVNISAFNLSKTVQDRLAQLTANRYDPQKKVLTLVANNHKTLPENKYEVKRLF
KELLHEASLADPNFVSVRTDNYKAPQPQSFVPSQAAKNQTRFNLYRLQGFPLLDNQQRQH
MELYSHIRSHLDSTYK
Translated Amino Acid sequence (All Frames) 
Frame A:
RDATNLLTVGEMSLKAGTRPSTEDEIIDLLPHDEEVREEHEDDLVDDEKVVATTNEEEPS
QEVEESEPAPDIEDPFAINKDFFDKNGRFLLSDKIEAEEQEQEDLIKDDDVAIENVESLI
TEESVPIAVEESVTTVVEESVTKPPKFLERFAEKGKLPPIRNSNKDSVRQIAESLFNINF
DYQEELDEIDGRMDAIDAFHENQEELPLDEREGELDE---

---tfnkvrikngldlkksvikisphlnvvklgiqdntsklihsnslaltippikllkiv
gsiekpy*kltsllsiyqrpfkid*ln*plivmthkrkyslwsptitkhfqkinmklrdy
sknyymkqv*liqissllelitiklhnhnplyllkplkikldsisivykvshf*iinkdn
iwnfihi*dhi*iqlik

Frame B:
emlqiy*qlvkch*klvldhqpkmrsliffhmmkrsvknmkmi*smmkrllqppmkknhl
kklknlnqlqilkihlqltkislirmvdsfyliklklknknkri*lkmmmsqlkmlnlls
lkslfqlqlksl*ql*lksl*qslqns*kdslkkenyhqseiaiktvldksqnhcltlis
tikrnsmklmvewtlsmhsmktkknyhlmkervnwmk---

---pstr*esrmv*t*knq**ryhlt*tssnlvsktthqnlsirih*lsqyhrsny*r*l
gq*ksriks*hlcfqfikdrsr*issinr*sl*ptkesthfgrqqsqntsrk*i*s*eii
qriit*skfs*skfrlc*n**l*sstttilctfssr*ksn*iqslsftrfptfr*stktt
ygtlftykitfrfnl*n

Frame C:
rcykfidsw*nvieswy*tinrr*dh*ssst**rgp*rt*r*fsr**kgccnhq*rrtis
rs*ri*tssry*rsicn*qrfl**ew*ipfi**n*s*rtrtrgfd*r**crn*kc*isyh
*rvcsncs*rvcnncs*rvcnkaskilrkir*krkittnqk*q*rqc*tnrriiv*h*fr
lsrgtr*n*w*ngryrcip*kprritt**krg*ig*---

---LQQGKNQEWFRPEKISDKDITSLERRQTWYPRQHIKTYPFEFISSHNTTDQTIEDSW
VNRKAVLKVNISAFNLSKTVQDRLAQLTANRYDPQKKVLTLVANNHKTLPENKYEVKRLF
KELLHEASLADPNFVSVRTDNYKAPQPQSFVPSQAAKNQTRFNLYRLQGFPLLDNQQRQH
MELYSHIRSHLDSTYK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG193 (VHG193Q) /CSM/VH/VHG1-D/VHG193Q.Seq.d/                       2409   0.0
VHO759 (VHO759Q) /CSM/VH/VHO7-C/VHO759Q.Seq.d/                       1134   0.0
SHD657 (SHD657Q) /CSM/SH/SHD6-C/SHD657Q.Seq.d/                       1134   0.0
VSH763 (VSH763Q) /CSM/VS/VSH7-C/VSH763Q.Seq.d/                       1120   0.0
AHE462 (AHE462Q) /CSM/AH/AHE4-C/AHE462Q.Seq.d/                       1104   0.0
AHN315 (AHN315Q) /CSM/AH/AHN3-A/AHN315Q.Seq.d/                        305   9e-82
SHG805 (SHG805Q) /CSM/SH/SHG8-A/SHG805Q.Seq.d/                        301   1e-80
VHJ730 (VHJ730Q) /CSM/VH/VHJ7-B/VHJ730Q.Seq.d/                        281   1e-74
VHF883 (VHF883Q) /CSM/VH/VHF8-D/VHF883Q.Seq.d/                        163   8e-39
VHH236 (VHH236Q) /CSM/VH/VHH2-B/VHH236Q.Seq.d/                        133   7e-30
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421796) Dictyostelium discoideum cDNA clone:ddv43i23, 5' ...  1291   0.0    1
(BJ440492) Dictyostelium discoideum cDNA clone:ddv43i23, 3' ...  1156   0.0    1
(BJ445761) Dictyostelium discoideum cDNA clone:ddv60f15, 3' ...  1134   0.0    1
(BJ405377) Dictyostelium discoideum cDNA clone:dds31a16, 3' ...  1134   0.0    1
(AU267935) Dictyostelium discoideum vegetative cDNA clone:VS...  1065   0.0    1
(BJ350380) Dictyostelium discoideum cDNA clone:dda39l16, 3' ...  1051   0.0    2
(BJ332593) Dictyostelium discoideum cDNA clone:dda39l16, 5' ...  1035   0.0    1
(AU267934) Dictyostelium discoideum vegetative cDNA clone:VS...   971   0.0    1
(BJ426882) Dictyostelium discoideum cDNA clone:ddv60f15, 5' ...   876   0.0    1
(BJ355466) Dictyostelium discoideum cDNA clone:dda57n03, 3' ...   303   8e-78  1
dna update 2008.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF324661_1(AF324661|pid:none) Arabidopsis thaliana AT3g18240 (AT...    42   0.035
EZ000406_1(EZ000406|pid:none) TSA: Culex tarsalis Ctar-234 mitoc...    40   0.17
CR382139_698(CR382139|pid:none) Debaryomyces hansenii strain CBS...    39   0.30
AK068851_1(AK068851|pid:none) Oryza sativa Japonica Group cDNA c...    39   0.39
BT068901_1(BT068901|pid:none) Zea mays full-length cDNA clone ZM...    39   0.39
EZ000463_1(EZ000463|pid:none) TSA: Culex tarsalis Ctar-316 mitoc...    39   0.51
CP000500_328(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.51
CR382124_734(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    39   0.51
AM910993_328(AM910993|pid:none) Plasmodium knowlesi strain H chr...    38   0.86
AM471824_2(AM471824|pid:none) Vitis vinifera contig VV78X201397....    37   1.9
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHG193 is cyt
5' end seq. ID VHG193F
5' end seq. 
>VHG193F.Seq
AGAGATGCTACAAATTTATTGACAGTTGGTGAAATGTCATTGAAAGCTGGTACTAGACCA
TCAACCGAAGATGAGATCATTGATCTTCTTCCACATGATGAAGAGGTCCGTGAAGAACAT
GAAGATGATTTAGTCGATGATGAAAAGGTTGTTGCAACCACCAATGAAGAAGAACCATCT
CAAGAAGTTGAAGAATCTGAACCAGCTCCAGATATTGAAGATCCATTTGCAATTAACAAA
GATTTCTTTGATAAGAATGGTAGATTCCTTTTATCTGATAAAATTGAAGCTGAAGAACAA
GAACAAGAGGATTTGATTAAAGATGATGATGTCGCAATTGAAAATGTTGAATCTCTTATC
ACTGAAGAGTCTGTTCCAATTGCAGTTGAAGAGTCTGTAACAACTGTAGTTGAAGAGTCT
GTAACAAAGCCTCCAAAATTCTTAGAAAGATTCGCTGAAAAAGGAAAATTACCACCAATC
AGAAATAGCAATAAAGACAGTGTTAGACAAATCGCAGAATCATTGTTTAACATTAATTTC
GACTATCAAGAGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATGCATTCCAT
GAAAACCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGNNNNNNNN
NN
Length of 5' end seq. 662
3' end seq. ID VHG193Z
3' end seq. 
>VHG193Z.Seq
NNNNNNNNNNACCTTCAACAAGGTAAGAATCAAGAATGGTTTAGACCTGAAAAAATCAGT
GATAAAGATATCACCTCACTTGAACGTCGTCAAACTTGGTATCCAAGACAACACATCAAA
ACTTATCCATTCGAATTCATTAGCTCTCACAATACCACCGATCAAACTATTGAAGATAGT
TGGGTCAATAGAAAAGCCGTATTAAAAGTTAACATCTCTGCTTTCAATTTATCAAAGACC
GTTCAAGATAGATTAGCTCAATTAACCGCTAATCGTTATGACCCACAAAAGAAAGTACTC
ACTTTGGTCGCCAACAATCACAAAACACTTCCAGAAAATAAATATGAAGTTAAGAGATTA
TTCAAAGAATTATTACATGAAGCAAGTTTAGCTGATCCAAATTTCGTCTCTGTTAGAACT
GATAACTATAAAGCTCCACAACCACAATCCTTTGTACCTTCTCAAGCCGCTAAAAATCAA
ACTAGATTCAATCTCTATCGTTTACAAGGTTTCCCACTTTTAGATAATCAACAAAGACAA
CATATGGAACTTTATTCACATATAAGATCACATTTAGATTCAACTTATAAAAT
Length of 3' end seq. 593
Connected seq. ID VHG193P
Connected seq. 
>VHG193P.Seq
AGAGATGCTACAAATTTATTGACAGTTGGTGAAATGTCATTGAAAGCTGGTACTAGACCA
TCAACCGAAGATGAGATCATTGATCTTCTTCCACATGATGAAGAGGTCCGTGAAGAACAT
GAAGATGATTTAGTCGATGATGAAAAGGTTGTTGCAACCACCAATGAAGAAGAACCATCT
CAAGAAGTTGAAGAATCTGAACCAGCTCCAGATATTGAAGATCCATTTGCAATTAACAAA
GATTTCTTTGATAAGAATGGTAGATTCCTTTTATCTGATAAAATTGAAGCTGAAGAACAA
GAACAAGAGGATTTGATTAAAGATGATGATGTCGCAATTGAAAATGTTGAATCTCTTATC
ACTGAAGAGTCTGTTCCAATTGCAGTTGAAGAGTCTGTAACAACTGTAGTTGAAGAGTCT
GTAACAAAGCCTCCAAAATTCTTAGAAAGATTCGCTGAAAAAGGAAAATTACCACCAATC
AGAAATAGCAATAAAGACAGTGTTAGACAAATCGCAGAATCATTGTTTAACATTAATTTC
GACTATCAAGAGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATGCATTCCAT
GAAAACCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAG--------
--ACCTTCAACAAGGTAAGAATCAAGAATGGTTTAGACCTGAAAAAATCAGTGATAAAGA
TATCACCTCACTTGAACGTCGTCAAACTTGGTATCCAAGACAACACATCAAAACTTATCC
ATTCGAATTCATTAGCTCTCACAATACCACCGATCAAACTATTGAAGATAGTTGGGTCAA
TAGAAAAGCCGTATTAAAAGTTAACATCTCTGCTTTCAATTTATCAAAGACCGTTCAAGA
TAGATTAGCTCAATTAACCGCTAATCGTTATGACCCACAAAAGAAAGTACTCACTTTGGT
CGCCAACAATCACAAAACACTTCCAGAAAATAAATATGAAGTTAAGAGATTATTCAAAGA
ATTATTACATGAAGCAAGTTTAGCTGATCCAAATTTCGTCTCTGTTAGAACTGATAACTA
TAAAGCTCCACAACCACAATCCTTTGTACCTTCTCAAGCCGCTAAAAATCAAACTAGATT
CAATCTCTATCGTTTACAAGGTTTCCCACTTTTAGATAATCAACAAAGACAACATATGGA
ACTTTATTCACATATAAGATCACATTTAGATTCAACTTATAAAAT
Length of connected seq. 1235
Full length Seq ID -
Full length Seq. -
Length of full length seq. -