VHG190
Library VH
(Link to library)
Clone ID VHG190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11757-1
Original site URL
Representative seq. ID VHG190P
(Link to Original site)
Representative DNA sequence
>VHG190 (VHG190Q) /CSM/VH/VHG1-D/VHG190Q.Seq.d/
GTAAATTTATAAATATTGTACTTTTTAAAATGGAACCACCACTTGAACTACCAACACAAA
GAAAAAGAGTTATCCCATCAAAATTTGGTATCCTCAAAAGAAATGCAGAAATTGAAGCAG
AAAAAAACAGAGAAAATTTACAACAATCTTCATGTTTTAGTCATATAAATGAAATTGGTA
AAGAAATTGGTTTAGAAATTTGGAAAATTATTGATGATTCAACAATTCAAAAAGTTCCAA
AAGTGAATCATTCAACTTTTGAAACTAATAAATCTTATTTATTATTAATGGGACAATTTT
ATGATGGTAATATGAATATTAAAACTTATAATATTCATTTTTGGATTGGTGAATTATTAA
TAAATTCACAAGAAACAATTAATTTTTGTAATGATAGAATTGAAGAACTTGAAAGAATTA
TTAAATATAATCAAAAACAATTTGATTCAGAACAATTTTATCCAGAACCAATTCTTTATA
GAGAATTTCAAGGTAAAGAAGGTGATATTTTTATGTCATACTTTAAATCTTATGGTGGTC
CAAGATATGTTGCACCATTGAAATTAACATCAGCATCAGCAGCAATTGCAACAGCAGCAA
AACAATATAAATTATTXXXXXXXXXXCAAATNCCTCTANTCCATCNCCAAATACAATTAC
AACATTCTATCCATTATCAGTTTTAAAACAAAAAANTNATTTACCAAATGATATTGATAA
AAGTTGTCT
sequence update 2002.10.25
Translated Amino Acid sequence
KFINIVLFKMEPPLELPTQRKRVIPSKFGILKRNAEIEAEKNRENLQQSSCFSHINEIGK
EIGLEIWKIIDDSTIQKVPKVNHSTFETNKSYLLLMGQFYDGNMNIKTYNIHFWIGELLI
NSQETINFCNDRIEELERIIKYNQKQFDSEQFYPEPILYREFQGKEGDIFMSYFKSYGGP
RYVAPLKLTSASAAIATAAKQYKL---

---NXSXPSPNTITTFYPLSVLKQKXXLPNDIDKSC


Translated Amino Acid sequence (All Frames)
Frame A:
vnl*ilyflkwnhhlnyqhkekelshqnlvsskemqklkqkktekiynnlhvlvi*mklv
kklv*kfgkllmiqqfkkfqk*iiqllklinliyy*wdnfmmvi*ilkliififglvny*
*ihkkqlifvmielknlkellniiknnliqnnfiqnqffienfkvkkviflchtlnlmvv
qdmlhh*n*hqhqqqlqqqqnniny---

---qxplxhxqiqlqhsihyqf*nkkxiyqmilikvv

Frame B:
*iykyctf*ngttt*ttntkkksypikiwypqkkcrn*srkkqrkfttifmf*syk*nw*
rnwfrnleny**fnnskssksesfnf*n**ilfiingtil*w*yey*nl*ysfldw*iin
kftrnn*fl***n*rt*kny*i*skti*frtilsrtnsl*risr*rr*yfyvil*ilwws
kicctieinisissncnsskti*ii---

---kxlxsixkynynilsiisfktkxxftk*y**kls

Frame C:
KFINIVLFKMEPPLELPTQRKRVIPSKFGILKRNAEIEAEKNRENLQQSSCFSHINEIGK
EIGLEIWKIIDDSTIQKVPKVNHSTFETNKSYLLLMGQFYDGNMNIKTYNIHFWIGELLI
NSQETINFCNDRIEELERIIKYNQKQFDSEQFYPEPILYREFQGKEGDIFMSYFKSYGGP
RYVAPLKLTSASAAIATAAKQYKL---

---NXSXPSPNTITTFYPLSVLKQKXXLPNDIDKSC

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG190 (VHG190Q) /CSM/VH/VHG1-D/VHG190Q.Seq.d/ 1314 0.0
VHK838 (VHK838Q) /CSM/VH/VHK8-B/VHK838Q.Seq.d/ 1179 0.0
VHK614 (VHK614Q) /CSM/VH/VHK6-A/VHK614Q.Seq.d/ 1179 0.0
VHH828 (VHH828Q) /CSM/VH/VHH8-B/VHH828Q.Seq.d/ 1179 0.0
CHG862 (CHG862Q) /CSM/CH/CHG8-C/CHG862Q.Seq.d/ 1178 0.0
VHC852 (VHC852Q) /CSM/VH/VHC8-C/VHC852Q.Seq.d/ 1154 0.0
VHL689 (VHL689Q) /CSM/VH/VHL6-D/VHL689Q.Seq.d/ 1027 0.0
VHL573 (VHL573Q) /CSM/VH/VHL5-D/VHL573Q.Seq.d/ 1027 0.0
VHO706 (VHO706Q) /CSM/VH/VHO7-A/VHO706Q.Seq.d/ 1021 0.0
SHH565 (SHH565Q) /CSM/SH/SHH5-C/SHH565Q.Seq.d/ 1021 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424426) Dictyostelium discoideum cDNA clone:ddv52l10, 5' ... 969 0.0 2
(BJ424342) Dictyostelium discoideum cDNA clone:ddv52k04, 5' ... 969 0.0 2
(BJ422561) Dictyostelium discoideum cDNA clone:ddv46h08, 5' ... 969 0.0 2
(BJ421765) Dictyostelium discoideum cDNA clone:ddv43c23, 5' ... 969 0.0 2
(BJ365522) Dictyostelium discoideum cDNA clone:ddc35l16, 5' ... 967 0.0 2
(BJ419594) Dictyostelium discoideum cDNA clone:ddv36h14, 5' ... 944 0.0 2
(X74387) D. discoideum (AX2, AX3) gene for protovillin. 648 0.0 4
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 648 0.0 4
(BJ425129) Dictyostelium discoideum cDNA clone:ddv54a19, 5' ... 817 0.0 2
(BJ425133) Dictyostelium discoideum cDNA clone:ddv54a24, 5' ... 817 0.0 2
dna update 2008.11. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36418) RecName: Full=Protovillin; AltName: Full=100 kDa actin-... 375 e-103
U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 58 3e-07
AF088901_1(AF088901|pid:none) Lilium longiflorum actin bundling ... 56 1e-06
EF042093_1(EF042093|pid:none) Lilium longiflorum actin-binding p... 56 1e-06
BT055016_1(BT055016|pid:none) Zea mays full-length cDNA clone ZM... 55 2e-06
S51363(S51363;S49320) actin modulator protein EWAM - earthworm (... 53 8e-06
T23355(T23355) hypothetical protein K06A4.3 - Caenorhabditis ele... 53 1e-05
BC135025_1(BC135025|pid:none) Danio rerio gelsolin b, mRNA (cDNA... 52 1e-05
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 52 2e-05
AK318626_1(AK318626|pid:none) Arabidopsis thaliana AT3G57410 mRN... 52 2e-05
protein update 2009. 7. 6
PSORT

psg: 0.69 gvh: 0.29 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for VHG190 is cyt

5' end seq. ID VHG190F
5' end seq.
>VHG190F.Seq
GTAAATTTATAAATATTGTACTTTTTAAAATGGAACCACCACTTGAACTACCAACACAAA
GAAAAAGAGTTATCCCATCAAAATTTGGTATCCTCAAAAGAAATGCAGAAATTGAAGCAG
AAAAAAACAGAGAAAATTTACAACAATCTTCATGTTTTAGTCATATAAATGAAATTGGTA
AAGAAATTGGTTTAGAAATTTGGAAAATTATTGATGATTCAACAATTCAAAAAGTTCCAA
AAGTGAATCATTCAACTTTTGAAACTAATAAATCTTATTTATTATTAATGGGACAATTTT
ATGATGGTAATATGAATATTAAAACTTATAATATTCATTTTTGGATTGGTGAATTATTAA
TAAATTCACAAGAAACAATTAATTTTTGTAATGATAGAATTGAAGAACTTGAAAGAATTA
TTAAATATAATCAAAAACAATTTGATTCAGAACAATTTTATCCAGAACCAATTCTTTATA
GAGAATTTCAAGGTAAAGAAGGTGATATTTTTATGTCATACTTTAAATCTTATGGTGGTC
CAAGATATGTTGCACCATTGAAATTAACATCAGCATCAGCAGCAATTGCAACAGCAGCAA
AACAATATAAATTATTNNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID VHG190Z
3' end seq.
>VHG190Z.Seq
NNNNNNNNNNCAAATNCCTCTANTCCATCNCCAAATACAATTACAACATTCTATCCATTA
TCAGTTTTAAAACAAAAAANTNATTTACCAAATGATATTGATAAAAGTTGTCT
Length of 3' end seq. 113
Connected seq. ID VHG190P
Connected seq.
>VHG190P.Seq
GTAAATTTATAAATATTGTACTTTTTAAAATGGAACCACCACTTGAACTACCAACACAAA
GAAAAAGAGTTATCCCATCAAAATTTGGTATCCTCAAAAGAAATGCAGAAATTGAAGCAG
AAAAAAACAGAGAAAATTTACAACAATCTTCATGTTTTAGTCATATAAATGAAATTGGTA
AAGAAATTGGTTTAGAAATTTGGAAAATTATTGATGATTCAACAATTCAAAAAGTTCCAA
AAGTGAATCATTCAACTTTTGAAACTAATAAATCTTATTTATTATTAATGGGACAATTTT
ATGATGGTAATATGAATATTAAAACTTATAATATTCATTTTTGGATTGGTGAATTATTAA
TAAATTCACAAGAAACAATTAATTTTTGTAATGATAGAATTGAAGAACTTGAAAGAATTA
TTAAATATAATCAAAAACAATTTGATTCAGAACAATTTTATCCAGAACCAATTCTTTATA
GAGAATTTCAAGGTAAAGAAGGTGATATTTTTATGTCATACTTTAAATCTTATGGTGGTC
CAAGATATGTTGCACCATTGAAATTAACATCAGCATCAGCAGCAATTGCAACAGCAGCAA
AACAATATAAATTATT----------CAAATNCCTCTANTCCATCNCCAAATACAATTAC
AACATTCTATCCATTATCAGTTTTAAAACAAAAAANTNATTTACCAAATGATATTGATAA
AAGTTGTCT
Length of connected seq. 719
Full length Seq ID -
Full length Seq. -
Length of full length seq. -