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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG172
Library VH
(Link to library)
Clone ID VHG172
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14682-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHG172 (VHG172Q) /CSM/VH/VHG1-C/VHG172Q.Seq.d/
XXXXXXXXXXAAANGTCAANATTCNATTTGTAAAAAAGGNGTTGGNTGTGTTTATTTCAA
TTGNACTTGTCCCCCANACGANGATTGTAGCTNTGNTTACTGTTCNATGGAAACTGGNTA
ATGNATATNNAAAGCATNCGATCCNTTACCNTTTTTTTGTCAATCAANTGNTGTTAAANT
TGGNGNTGGNATTGGNGCTGCCNCTGCTGNTGGTATTGCAATTGGNG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---XVXIXFVKKXLXVFISIXLVPXTXIVAXXTVXWKLXNXYXKHXIXYXFFVNQXXLXL
XXXLXLPLLXVLQLX
Translated Amino Acid sequence (All Frames) 
Frame A:
---XVXIXFVKKXLXVFISIXLVPXTXIVAXXTVXWKLXNXYXKHXIXYXFFVNQXXLXL
XXXLXLPLLXVLQLX


Frame B:
---xsxfxl*krxwxclfqlxlspxrxl*lxllfxgnwxmxxxsxrsxtxflsixxc*xw
xwxwxcxcxwycnw


Frame C:
---xqxsickkgvgcvyfnxtcppxxdcsxxycsmetg*xixkaxdplpffcqsxxvkxg
xgigaaxaxgiaig
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG172 (VHG172Q) /CSM/VH/VHG1-C/VHG172Q.Seq.d/                        224   4e-58
VHM530 (VHM530Q) /CSM/VH/VHM5-B/VHM530Q.Seq.d/                        184   4e-46
VHI835 (VHI835Q) /CSM/VH/VHI8-B/VHI835Q.Seq.d/                        184   4e-46
SLC522 (SLC522Q) /CSM/SL/SLC5-A/SLC522Q.Seq.d/                        184   4e-46
VHF506 (VHF506Q) /CSM/VH/VHF5-A/VHF506Q.Seq.d/                        178   2e-44
VHF208 (VHF208Q) /CSM/VH/VHF2-A/VHF208Q.Seq.d/                        178   2e-44
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440442) Dictyostelium discoideum cDNA clone:ddv43o17, 3' ...   176   3e-58  2
(AJ548838) Dictyostelium discoideum dicA gene for extracellu...   137   2e-46  2
(AJ548837) Dictyostelium discoideum mRNA for extracellular s...   137   2e-46  2
(BJ441936) Dictyostelium discoideum cDNA clone:ddv48f10, 3' ...   137   2e-46  2
(BJ444438) Dictyostelium discoideum cDNA clone:ddv56k07, 3' ...   137   2e-46  2
(AU034583) Dictyostelium discoideum slug cDNA, clone SLC522.      137   2e-46  2
(BJ439660) Dictyostelium discoideum cDNA clone:ddv41o02, 3' ...   131   1e-44  2
(BJ439940) Dictyostelium discoideum cDNA clone:ddv42k01, 3' ...   131   1e-44  2
dna update 2008.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 36   0.37
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 33   3.1
protein update 2009. 3. 4
PSORT 

 psg: 0.95  gvh: 0.48  alm: 0.30  top: 0.50  tms: 0.07  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for VHG172 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG172Z
3' end seq. 
>VHG172Z.Seq
NNNNNNNNNNAAANGTCAANATTCNATTTGTAAAAAAGGNGTTGGNTGTGTTTATTTCAA
TTGNACTTGTCCCCCANACGANGATTGTAGCTNTGNTTACTGTTCNATGGAAACTGGNTA
ATGNATATNNAAAGCATNCGATCCNTTACCNTTTTTTTGTCAATCAANTGNTGTTAAANT
TGGNGNTGGNATTGGNGCTGCCNCTGCTGNTGGTATTGCAATTGGNG
Length of 3' end seq. 227
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -