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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHG158
Library VH
(Link to library)
Clone ID VHG158
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID VHG158E
(Link to Original site)
Representative DNA sequence 
>VHG158 (VHG158Q) /CSM/VH/VHG1-C/VHG158Q.Seq.d/
ATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATG
CAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACA
AAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTT
TGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTC
CAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATG
GTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTG
TCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTG
ATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTC
CACCAGATTNTGAAATTGTTAGCCATTTAACAGTTCGTCAAACNCATACACCATATGNCT
ATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTA
TTAAAAAAGATGANACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTT
TCATCT
sequence update 2002.10.27
Translated Amino Acid sequence 
*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCL
VGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIV
NKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDXEIVSHLTVRQTHTPYXY
VVNGSVYFKYSPTTGQVTVIKKDXTFPKNMTVTQDDNTSFI
Translated Amino Acid sequence (All Frames) 
Frame A:
ik*iskvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschv
wlvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlmlkl
stkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhqixkllai*qfvkxihhmx
ml*mevftlntpqqlaklqllkkmxhsqri*llhkmiihlss


Frame B:
lnkfqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmf
gwfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*nc
qqs*fncwfi*ndhysips**gclqrw**lcsiansktystrx*nc*pfnsssnxytixl
cckwkcll*ilpnnwpsysy*kr*xipkeydcytr**yifh


Frame C:
*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCL
VGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIV
NKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDXEIVSHLTVRQTHTPYXY
VVNGSVYFKYSPTTGQVTVIKKDXTFPKNMTVTQDDNTSFI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                       1116   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                       1116   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                       1116   0.0
VHG158 (VHG158Q) /CSM/VH/VHG1-C/VHG158Q.Seq.d/                       1116   0.0
VHC822 (VHC822Q) /CSM/VH/VHC8-A/VHC822Q.Seq.d/                       1116   0.0
VHB309 (VHB309Q) /CSM/VH/VHB3-A/VHB309Q.Seq.d/                       1116   0.0
VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/                       1116   0.0
VFG405 (VFG405Q) /CSM/VF/VFG4-A/VFG405Q.Seq.d/                       1116   0.0
VFC575 (VFC575Q) /CSM/VF/VFC5-D/VFC575Q.Seq.d/                       1116   0.0
VFA822 (VFA822Q) /CSM/VF/VFA8-A/VFA822Q.Seq.d/                       1116   0.0
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U49650) Dictyostelium discoideum calcium-dependent cell adh...  1116   0.0    1
(AU076357) Dictyostelium discoideum slug cDNA, clone SSA641.     1116   0.0    1
(C94392) Dictyostelium discoideum slug cDNA, clone SSK613.       1116   0.0    1
(C91961) Dictyostelium discoideum slug cDNA, clone SSC587.       1116   0.0    1
(C91121) Dictyostelium discoideum slug cDNA, clone SSJ652.       1116   0.0    1
(BJ443951) Dictyostelium discoideum cDNA clone:ddv54p18, 3' ...  1116   0.0    1
(BJ438038) Dictyostelium discoideum cDNA clone:ddv36l06, 3' ...  1116   0.0    1
(BJ432722) Dictyostelium discoideum cDNA clone:ddv19e17, 3' ...  1116   0.0    1
(BJ430308) Dictyostelium discoideum cDNA clone:ddv6e19, 3' e...  1116   0.0    1
(BJ419454) Dictyostelium discoideum cDNA clone:ddv36l06, 5' ...  1116   0.0    1
dna update 2008.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   424   e-118
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   392   e-108
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    92   1e-17
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    61   3e-08
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    55   2e-06
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    33   5.8
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   9.8
protein update 2009. 3. 9
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHG158 is cyt
5' end seq. ID VHG158F
5' end seq. 
>VHG158F.Seq
ATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATG
CAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACA
AAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTT
TGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTC
CAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATG
GTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTG
TCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTG
ATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTC
CACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACT
ATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTA
TTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACNNNNNNNNNN
Length of 5' end seq. 652
3' end seq. ID VHG158Z
3' end seq. 
>VHG158Z.Seq
NNNNNNNNNNGTTCATATNAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTNGC
AAAGATGGTGATGACTTTGTTCAATNNCCAATTCCAAAACTTACTCCACCAGANTGTGAA
ATTGTTAGCCATTTAACAGTTCGTCAAACGCATACACCATNTGTCTATGTNGTAAATGGA
AGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAC
ACATTCCCAAAGAATATGNCTGTTACACAAGATGATAATACATCTTTCATCT
Length of 3' end seq. 292
Connected seq. ID VHG158P
Connected seq. 
>VHG158P.Seq
ATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATG
CAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACA
AAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTT
TGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTC
CAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATG
GTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTG
TCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTG
ATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTC
CACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACT
ATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTA
TTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACAC----------GTTCATAT
NAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTNGCAAAGATGGTGATGACTTT
GTTCAATNNCCAATTCCAAAACTTACTCCACCAGANTGTGAAATTGTTAGCCATTTAACA
GTTCGTCAAACGCATACACCATNTGTCTATGTNGTAAATGGAAGTGTTTACTTTAAATAC
TCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGACACATTCCCAAAGAATATG
NCTGTTACACAAGATGATAATACATCTTTCATCT
Length of connected seq. 924
Full length Seq ID VHG158E
Full length Seq. 
>VHG158E.Seq
ATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATG
CAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACA
AAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTT
TGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTC
CAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATG
GTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTG
TCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTG
ATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTC
CACCAGATTNTGAAATTGTTAGCCATTTAACAGTTCGTCAAACNCATACACCATATGNCT
ATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTA
TTAAAAAAGATGANACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTT
TCATCT
Length of full length seq. 666