AFN848
Library AF
(Link to library)
Clone ID AFN848
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID AFN848P
(Link to Original site)
Representative DNA sequence
>AFN848 (AFN848Q) /CSM/AF/AFN8-B/AFN848Q.Seq.d/
ATTTTCAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGA
TGACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGA
CAATATGGAGCTCCCAAAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCC
ATCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCA
AGCTCAATCTGGTACTGGTAAAACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGA
TATTTCAGTCCTCAAATGTCAAGCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACA
AATTCAAAAGGTTGTTTTAGCTTTAGGTGAATATTTACACATTAAATCATACGCATGTAT
TGGTGGTACTAAGATTACTGATGATATTCAAGCCCTCCAAAGTGGTGTACACGTAGTTGT
CGGTACCCCAGGTCGTGTCTTTGAAATGTTATCACGTGGTATCATTAATCGTGACACCAT
TAGAATTTTCTGTCTTGATGAAGCTGATGAAATGXXXXXXXXXXTTCATGCAAAACCCAG
TCAGTATCCTCGTCAAAAAGGATGAATTAACCCTTGAAGGTATTAGACAATTNTACGTCA
ACGTTGGTGTTGAACAAGGTAAATTTGAAGTTTTAACCGATCTCTACGAAACCCTCTCTA
TCACTCAATCCGTTATTTTCTGTAACACCCGTAGAAAGGTCGATTGGTTAACAAGCAAAA
TGACCGAACAAAAATTCACCGTCTCATCAACTCACGGTGACCAAAAGGATCGTGATGGTA
TCTTACAAGCTTTCCGTTCTGGTGCTACTCGTGTCCTCATCACCACCGATCTCTTAGCTC
GTGGTATTGATGTCCAACAAGTATCACTCGTTATCAACTTTGATTTACCAACCAACATTG
AAAATTACATTCATCGTATCGGTCGTTCAGGTCGTTTCGGTCGTAAGGGTGTTGCCATCA
ACTTTATCACTGACGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTACAATACCT
ACATTGCCGAAATGCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAAAATGGTT
TATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACCGCCCCCC
TCCCTATCCAATACTCACACCACAACAACATATTTCATCCGCTCATTATAAAAACAACAA
AAACTTCAACGCTTTTACACCTCG
sequence update 2001. 6. 1
Translated Amino Acid sequence
fsrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKP
SAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQ
IQKVVLALGEYLHIKSYACIGGTKITDDIQALQSGVHVVVGTPGRVFEMLSRGIINRDTI
RIFCLDEADEM---

---FMQNPVSILVKKDELTLEGIRQXYVNVGVEQGKFEVLTDLYETLSITQSVIFCNTRR
KVDWLTSKMTEQKFTVSSTHGDQKDRDGILQAFRSGATRVLITTDLLARGIDVQQVSLVI
NFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRHYNTYIAEMPQDIGSF
L*tsskngl*fswspfgeghrvykstaplpiqyshhnnifhpliikttktstllhl


Translated Amino Acid sequence (All Frames)
Frame A:
ifktdffrqk*ikhvrk**r*pthek*vrkylrqncrfirqygapkgslkrylllwf*ka
ishptksyhstlkrf*yycpssiwyw*ncylhrwyli*n*yfspqmssshhcpns*tcst
nskgcfsfr*ifth*iirmywwy*dy**yssppkwctrscryprscl*nvitwyh*s*hh
*nfls**s**n---

---FMQNPVSILVKKDELTLEGIRQXYVNVGVEQGKFEVLTDLYETLSITQSVIFCNTRR
KVDWLTSKMTEQKFTVSSTHGDQKDRDGILQAFRSGATRVLITTDLLARGIDVQQVSLVI
NFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRHYNTYIAEMPQDIGSF
L*tsskngl*fswspfgeghrvykstaplpiqyshhnnifhpliikttktstllhl

Frame B:
fsrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKP
SAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQ
IQKVVLALGEYLHIKSYACIGGTKITDDIQALQSGVHVVVGTPGRVFEMLSRGIINRDTI
RIFCLDEADEM---

---scktqsvssskrmn*plkvldnxtstlvlnkvnlkf*pistkpslslnplfsvtpve
rsig*qak*pnknspshqltvtkrivmvsyklsvlvllvsssppis*lvvlmsnkyhsls
tliyqptlkitfivsvvqvvsvvrvlpstlsltlkevksmnylvitiptlpkchktlevs
skrvpkmvyssvgphlvraigfinrpppslsnthttttyfirsl*kqqklqrfyts

Frame C:
fqdrllqtkvnktcpqvikmtns*kmsskvpttklsihstiwssqris*evstpmvlksh
qpsnkelsfhsqkvlillpklnlvlvkllpsplvsylelifqssnvklsslpqlvnllnk
fkrlf*l*vniytlnhthvlvvlrllmifkpskvvyt*lsvpqvvslkcyhvvslivtpl
efsvlmklmk---

---hakpsqyprqkg*inp*ry*tixrqrwc*tr*i*sfnrslrnplyhsiryfl*hp*k
grlvnkqndrtkihrlinsr*pkgs*wyltsfpfwcyscphhhrslsswy*cptsitryq
l*ftnqh*klhssyrsfrsfrs*gcchqlyh*r*krsnr*iisslqylhcrnatrhwkfp
lnefqkwfivqlvpiw*gp*gl*idrpppypiltpqqhissahyknnknfnaftp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN848 (AFN848Q) /CSM/AF/AFN8-B/AFN848Q.Seq.d/ 2480 0.0
SFA632 (SFA632Q) /CSM/SF/SFA6-B/SFA632Q.Seq.d/ 1382 0.0
VFI122 (VFI122Q) /CSM/VF/VFI1-A/VFI122Q.Seq.d/ 1380 0.0
SFE424 (SFE424Q) /CSM/SF/SFE4-A/SFE424Q.Seq.d/ 1380 0.0
SFI627 (SFI627Q) /CSM/SF/SFI6-B/SFI627Q.Seq.d/ 1376 0.0
SFI137 (SFI137Q) /CSM/SF/SFI1-B/SFI137Q.Seq.d/ 1376 0.0
SFH138 (SFH138Q) /CSM/SF/SFH1-B/SFH138Q.Seq.d/ 1376 0.0
SFF653 (SFF653Q) /CSM/SF/SFF6-C/SFF653Q.Seq.d/ 1376 0.0
SFE202 (SFE202Q) /CSM/SF/SFE2-A/SFE202Q.Seq.d/ 1376 0.0
CFK294 (CFK294Q) /CSM/CF/CFK2-D/CFK294Q.Seq.d/ 1376 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds. 1358 0.0 2
X80796|X80796.1 S.pombe eIF-4A mRNA for translation initiation factor. 115 4e-73 7
L40627|L40627.1 Schizosaccharomyces pombe cell cycle control protein eIF-4A (tif1) mRNA, complete cds. 115 5e-73 7
AL132828|AL132828.1 S.pombe chromosome I cosmid c1006. 115 8e-66 7
CF245450|CF245450.1 Fcylcold195 Fragilariopsis cylindrus SMART cDNA library (Clontech) Fragilariopsis cylindrus cDNA clone Antarctic 5', mRNA sequence. 113 3e-38 3
AX537016|AX537016.1 Sequence 617 from Patent WO02064766. 58 8e-36 6
AX536980|AX536980.1 Sequence 581 from Patent WO02064766. 58 8e-36 6
D84472|D84472.1 Candida albicans DNA for translation initiation factor, complete cds. 60 2e-35 6
AU011976|AU011976.1 Schizosaccharomyces pombe cDNA, clone spc06170. 66 8e-32 5
AU011946|AU011946.1 Schizosaccharomyces pombe cDNA, clone spc06139. 66 9e-32 5
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m... 350 0.0
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi... 244 e-122
(Q02748) RecName: Full=Eukaryotic initiation factor 4A; ... 239 e-121
DQ150250_1(DQ150250|pid:none) Bombyx mori translation initiation... 234 e-121
DQ667140_1(DQ667140|pid:none) Callinectes sapidus eukaryotic ini... 248 e-121
(P41382) RecName: Full=Eukaryotic initiation factor 4A-10; ... 235 e-121
(P41376) RecName: Full=Eukaryotic initiation factor 4A-1; ... 236 e-121
S52019(S52019;S44933)translation initiation factor eIF-4A.7 - co... 234 e-121
AY081287_1(AY081287|pid:none) Arabidopsis thaliana eukaryotic tr... 235 e-121
(Q40470) RecName: Full=Eukaryotic initiation factor 4A-7; ... 233 e-120
protein update 2009. 4.25
PSORT

psg: 0.75 gvh: 0.28 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for AFN848 is cyt

5' end seq. ID AFN848F
5' end seq.
>AFN848F.Seq
ATTTTCAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGA
TGACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGA
CAATATGGAGCTCCCAAAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCC
ATCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCA
AGCTCAATCTGGTACTGGTAAAACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGA
TATTTCAGTCCTCAAATGTCAAGCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACA
AATTCAAAAGGTTGTTTTAGCTTTAGGTGAATATTTACACATTAAATCATACGCATGTAT
TGGTGGTACTAAGATTACTGATGATATTCAAGCCCTCCAAAGTGGTGTACACGTAGTTGT
CGGTACCCCAGGTCGTGTCTTTGAAATGTTATCACGTGGTATCATTAATCGTGACACCAT
TAGAATTTTCTGTCTTGATGAAGCTGATGAAATG----------
Length of 5' end seq. 574
3' end seq. ID AFN848Z
3' end seq.
>AFN848Z.Seq
----------TTCATGCAAAACCCAGTCAGTATCCTCGTCAAAAAGGATGAATTAACCCT
TGAAGGTATTAGACAATTNTACGTCAACGTTGGTGTTGAACAAGGTAAATTTGAAGTTTT
AACCGATCTCTACGAAACCCTCTCTATCACTCAATCCGTTATTTTCTGTAACACCCGTAG
AAAGGTCGATTGGTTAACAAGCAAAATGACCGAACAAAAATTCACCGTCTCATCAACTCA
CGGTGACCAAAAGGATCGTGATGGTATCTTACAAGCTTTCCGTTCTGGTGCTACTCGTGT
CCTCATCACCACCGATCTCTTAGCTCGTGGTATTGATGTCCAACAAGTATCACTCGTTAT
CAACTTTGATTTACCAACCAACATTGAAAATTACATTCATCGTATCGGTCGTTCAGGTCG
TTTCGGTCGTAAGGGTGTTGCCATCAACTTTATCACTGACGCTGAAAGAGGTCAAATCGA
TGAATTATCTCGTCATTACAATACCTACATTGCCGAAATGCCACAAGACATTGGAAGTTT
CCTCTAAACGAGTTCCAAAAATGGTTTATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCA
TAGGGTTTATAAATCGACCGCCCCCCTCCCTATCCAATACTCACACCACAACAACATATT
TCATCCGCTCATTATAAAAACAACAAAAACTTCAACGCTTTTACACCTCG
Length of 3' end seq. 700
Connected seq. ID AFN848P
Connected seq.
>AFN848P.Seq
ATTTTCAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGA
TGACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGA
CAATATGGAGCTCCCAAAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCC
ATCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCA
AGCTCAATCTGGTACTGGTAAAACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGA
TATTTCAGTCCTCAAATGTCAAGCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACA
AATTCAAAAGGTTGTTTTAGCTTTAGGTGAATATTTACACATTAAATCATACGCATGTAT
TGGTGGTACTAAGATTACTGATGATATTCAAGCCCTCCAAAGTGGTGTACACGTAGTTGT
CGGTACCCCAGGTCGTGTCTTTGAAATGTTATCACGTGGTATCATTAATCGTGACACCAT
TAGAATTTTCTGTCTTGATGAAGCTGATGAAATG----------TTCATGCAAAACCCAG
TCAGTATCCTCGTCAAAAAGGATGAATTAACCCTTGAAGGTATTAGACAATTNTACGTCA
ACGTTGGTGTTGAACAAGGTAAATTTGAAGTTTTAACCGATCTCTACGAAACCCTCTCTA
TCACTCAATCCGTTATTTTCTGTAACACCCGTAGAAAGGTCGATTGGTTAACAAGCAAAA
TGACCGAACAAAAATTCACCGTCTCATCAACTCACGGTGACCAAAAGGATCGTGATGGTA
TCTTACAAGCTTTCCGTTCTGGTGCTACTCGTGTCCTCATCACCACCGATCTCTTAGCTC
GTGGTATTGATGTCCAACAAGTATCACTCGTTATCAACTTTGATTTACCAACCAACATTG
AAAATTACATTCATCGTATCGGTCGTTCAGGTCGTTTCGGTCGTAAGGGTGTTGCCATCA
ACTTTATCACTGACGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTACAATACCT
ACATTGCCGAAATGCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAAAATGGTT
TATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACCGCCCCCC
TCCCTATCCAATACTCACACCACAACAACATATTTCATCCGCTCATTATAAAAACAACAA
AAACTTCAACGCTTTTACACCTCG
Length of connected seq. 1274
Full length Seq ID -
Full length Seq. -
Length of full length seq. -