VHG145
Library VH
(Link to library)
Clone ID VHG145
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15567-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHG145 (VHG145Q) /CSM/VH/VHG1-B/VHG145Q.Seq.d/
XXXXXXXXXXCACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAA
CCATCTGAAAAGAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTT
CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATNTATTTCATGCCA
CATGTTGGTCAATTNTTTCAAGGTATTACCCTTACAATNTCAATGGAACTCAAATATCCA
ATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATT
AAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATANCTGTTAC
AATTGGTGGTTTTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---PPSCFGISGYSGAGSKPSEKNDPTRLSDNILPYKLVQHTHELEVSHQLGSPXYFMPH
VGQXFQGITLTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHXCYN
WWF


Translated Amino Acid sequence (All Frames)
Frame A:
---ttilfwyfrlfrcw**ti*ke*sntsk**yltlqigstys*t*g*ssig*snxfhat
cwsixsryypynxngtqisndqrtsgrtlskilsk*tvn*nr*rwysrg*ik*w*txllq
lvvl


Frame B:
---PPSCFGISGYSGAGSKPSEKNDPTRLSDNILPYKLVQHTHELEVSHQLGSPXYFMPH
VGQXFQGITLTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHXCYN
WWF


Frame C:
---hhlvlvfqvipvlvvnhlkrmiqhv*viisyltnwfnilmnlrlvinwvvqxischm
lvnxfkvlplqxqwnsniq*pknkwsnviknsikmnr*lksikmvfqrlnqivvnixvti
ggf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG145 (VHG145Q) /CSM/VH/VHG1-B/VHG145Q.Seq.d/ 698 0.0
VSB196 (VSB196Q) /CSM/VS/VSB1-D/VSB196Q.Seq.d/ 688 0.0
VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/ 688 0.0
VHI108 (VHI108Q) /CSM/VH/VHI1-A/VHI108Q.Seq.d/ 688 0.0
SLE448 (SLE448Q) /CSM/SL/SLE4-B/SLE448Q.Seq.d/ 688 0.0
SHK272 (SHK272Q) /CSM/SH/SHK2-C/SHK272Q.Seq.d/ 688 0.0
CHM268 (CHM268Q) /CSM/CH/CHM2-C/CHM268Q.Seq.d/ 688 0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/ 688 0.0
AHE324 (AHE324Q) /CSM/AH/AHE3-A/AHE324Q.Seq.d/ 688 0.0
VHJ479 (VHJ479Q) /CSM/VH/VHJ4-D/VHJ479Q.Seq.d/ 682 0.0

own update 2002.12.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ440332) Dictyostelium discoideum cDNA clone:ddv43i11, 3' ... 698 0.0 1
(BJ442554) Dictyostelium discoideum cDNA clone:ddv50b11, 3' ... 660 0.0 2
(BJ350480) Dictyostelium discoideum cDNA clone:dda40b04, 3' ... 660 0.0 2
(AU261885) Dictyostelium discoideum vegetative cDNA clone:VS... 660 0.0 2
(AU034986) Dictyostelium discoideum slug cDNA, clone SLE448. 660 0.0 2
(BJ441589) Dictyostelium discoideum cDNA clone:ddv47o01, 3' ... 660 0.0 2
(BJ408103) Dictyostelium discoideum cDNA clone:dds44o18, 3' ... 660 0.0 2
(BJ350244) Dictyostelium discoideum cDNA clone:dda39p05, 3' ... 660 0.0 2
(BJ383014) Dictyostelium discoideum cDNA clone:ddc46g18, 3' ... 660 0.0 2
(BJ442457) Dictyostelium discoideum cDNA clone:ddv49n20, 3' ... 654 0.0 2
dna update 2008.11. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 130 1e-29
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 130 1e-29
(Q2P2F6) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 130 1e-29
(Q3BSI7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 130 1e-29
(B0RS54) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 128 7e-29
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 125 5e-28
(B2FMD7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 124 1e-27
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5... 123 2e-27
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete... 118 7e-26
CU928175_343(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 118 7e-26
protein update 2009. 7. 6
PSORT

psg: 0.88 gvh: 0.49 alm: 0.56 top: 0.47 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHG145 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHG145Z
3' end seq.
>VHG145Z.Seq
NNNNNNNNNNCACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAA
CCATCTGAAAAGAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTT
CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATNTATTTCATGCCA
CATGTTGGTCAATTNTTTCAAGGTATTACCCTTACAATNTCAATGGAACTCAAATATCCA
ATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATT
AAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATANCTGTTAC
AATTGGTGGTTTTG
Length of 3' end seq. 374
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -