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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF883
Library VH
(Link to library)
Clone ID VHF883
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11297-1|Contig-U12785-1
Original site URL
Representative seq. ID VHF883P
(Link to Original site)
Representative DNA sequence 
>VHF883 (VHF883Q) /CSM/VH/VHF8-D/VHF883Q.Seq.d/
GATNACATTTTTCTTTTTCAATACTCGCTCGCTTAACACACAAATTGTTGGAAAACAACA
TTTATTTAATCTATTTTTAAAAATATATATATTTGNGTTTGANGNGTGTGTGTATATTAT
ACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAAAA
GGNNNAAAAAAAXXXXXXXXXXGATGGTAGAATGGACNCTATCGATGCATTCCATGAAAA
CCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGATATTGTTAGACC
ATTACCATCANCTTTACCAGATNTTAAAGCNCTNTCTGCAAAGATTAGAAAGAATGAAGA
GGAATCATTGAATATGATCGCCAATAAATACATCAACCAAGAAGTCAATGAAAAAACTGC
AACCGAAGTATTGGATCAAATNTATGAAGCTTACAAAACCAATAATNTCTTTGATAAGGA
TATCATTGAACACGATAAAAACACCATTAGAGAAGCAAATGGTGACGTTGCAATTCCAGA
ATCTATGTACTTTGAATATGATACCACNTTTAGTGATTTGGTCGATAGAGATGTCATCTT
TAAAATGCCACTCAAAGATACTGATCTTGTTAGAGTTTTAACTCATCAACTCACTGAAAC
TGGTCTTTTGAAACAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
dxiflfqysla*htncwkttfi*sifkniyixv*xvcvyytfylhqil*INYKKKKKKKK
GXKK---

---DGRMDXIDAFHENQEELPLDEREGELDEDIVRPLPSXLPDXKALSAKIRKNEEESLN
MIANKYINQEVNEKTATEVLDQXYEAYKTNNXFDKDIIEHDKNTIREANGDVAIPESMYF
EYDTTFSDLVDRDVIFKMPLKDTDLVRVLTHQLTETGLLKQ
Translated Amino Acid sequence (All Frames) 
Frame A:
dxiflfqysla*htncwkttfi*sifkniyixv*xvcvyytfylhqil*INYKKKKKKKK
GXKK---

---DGRMDXIDAFHENQEELPLDEREGELDEDIVRPLPSXLPDXKALSAKIRKNEEESLN
MIANKYINQEVNEKTATEVLDQXYEAYKTNNXFDKDIIEHDKNTIREANGDVAIPESMYF
EYDTTFSDLVDRDVIFKMPLKDTDLVRVLTHQLTETGLLKQ

Frame B:
xtffffntrslntqivgkqhlfnlflkiyifxfxxcvyiihfiyikyck*iikkkkkkkk
xxk---

---mvewtlsmhsmktkknyhlmkervnwmkilldhyhxlyqxlkxxlqrlermkrnh*i
*spintstkksmkklqpkywikxmkltkpixslirislntiktplekqmvtlqfqnlctl
nmipxlviwsiemsslkchskilillef*linslklvf*nx

Frame C:
xhfsfsilarlthkllenniyliyf*kyiylxlxxvcilyilftsnivnkl*kkkkkkkr
xkk---

---w*ngxyrcip*kprritt**krg*ig*ryc*titixftrx*sxxckd*ke*rgiiey
drq*ihqprsq*kncnrsigsnx*slqnq*xl**gyh*tr*khh*rskw*rcnsriyvl*
i*yhx**fgr*rchl*natqry*sc*sfnssth*nwsfetx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF883 (VHF883Q) /CSM/VH/VHF8-D/VHF883Q.Seq.d/                        892   0.0
VHJ730 (VHJ730Q) /CSM/VH/VHJ7-B/VHJ730Q.Seq.d/                        876   0.0
SHG805 (SHG805Q) /CSM/SH/SHG8-A/SHG805Q.Seq.d/                        866   0.0
AHN315 (AHN315Q) /CSM/AH/AHN3-A/AHN315Q.Seq.d/                        864   0.0
VSH626 (VSH626Q) /CSM/VS/VSH6-B/VSH626Q.Seq.d/                        252   6e-66
VSA214 (VSA214Q) /CSM/VS/VSA2-A/VSA214Q.Seq.d/                        224   1e-57
VSG739 (VSG739Q) /CSM/VS/VSG7-B/VSG739Q.Seq.d/                        222   5e-57
VHG193 (VHG193Q) /CSM/VH/VHG1-D/VHG193Q.Seq.d/                        163   4e-39
VSJ289 (VSJ289Q) /CSM/VS/VSJ2-D/VSJ289Q.Seq.d/                         38   0.17
SSK323 (SSK323Q) /CSM/SS/SSK3-A/SSK323Q.Seq.d/                         38   0.17
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440156) Dictyostelium discoideum cDNA clone:ddv42f22, 3' ...   890   0.0    1
(BJ442600) Dictyostelium discoideum cDNA clone:ddv50l07, 3' ...   874   0.0    1
(BJ406995) Dictyostelium discoideum cDNA clone:dds37j02, 3' ...   864   0.0    1
(BJ355466) Dictyostelium discoideum cDNA clone:dda57n03, 3' ...   862   0.0    1
(BJ421483) Dictyostelium discoideum cDNA clone:ddv42f22, 5' ...   285   1e-72  1
(BJ337369) Dictyostelium discoideum cDNA clone:dda57n03, 5' ...   244   3e-64  2
(BJ394954) Dictyostelium discoideum cDNA clone:dds37j02, 5' ...   244   5e-63  2
(AU267729) Dictyostelium discoideum vegetative cDNA clone:VS...   244   7e-61  2
(AU261356) Dictyostelium discoideum vegetative cDNA clone:VS...   224   3e-54  1
(AU266770) Dictyostelium discoideum vegetative cDNA clone:VS...   222   1e-53  1
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.064
AL031746_11(AL031746|pid:none) Plasmodium falciparum DNA from MA...    35   1.6
AY099689_1(AY099689|pid:none) Arabidopsis thaliana unknown prote...    35   2.7
AL844505_185(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.7
AK226692_1(AK226692|pid:none) Arabidopsis thaliana mRNA for hypo...    35   2.7
CP001081_18(CP001081|pid:none) Clostridium botulinum Ba4 str. 65...    34   3.5
AY894835_26(AY894835|pid:none) Phytophthora infestans haplotype ...    34   4.6
AY898627_33(AY898627|pid:none) Phytophthora infestans haplotype ...    34   4.6
AP008937_37(AP008937|pid:none) Lactobacillus fermentum IFO 3956 ...    34   4.6
AY898628_33(AY898628|pid:none) Phytophthora infestans haplotype ...    34   4.6
protein update 2009. 7. 5
PSORT 

 psg: 0.41  gvh: 0.37  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHF883 is nuc
5' end seq. ID VHF883F
5' end seq. 
>VHF883F.Seq
GATNACATTTTTCTTTTTCAATACTCGCTCGCTTAACACACAAATTGTTGGAAAACAACA
TTTATTTAATCTATTTTTAAAAATATATATATTTGNGTTTGANGNGTGTGTGTATATTAT
ACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAAAA
GGNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 202
3' end seq. ID VHF883Z
3' end seq. 
>VHF883Z.Seq
NNNNNNNNNNGATGGTAGAATGGACNCTATCGATGCATTCCATGAAAACCAAGAAGAATT
ACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGATATTGTTAGACCATTACCATCANC
TTTACCAGATNTTAAAGCNCTNTCTGCAAAGATTAGAAAGAATGAAGAGGAATCATTGAA
TATGATCGCCAATAAATACATCAACCAAGAAGTCAATGAAAAAACTGCAACCGAAGTATT
GGATCAAATNTATGAAGCTTACAAAACCAATAATNTCTTTGATAAGGATATCATTGAACA
CGATAAAAACACCATTAGAGAAGCAAATGGTGACGTTGCAATTCCAGAATCTATGTACTT
TGAATATGATACCACNTTTAGTGATTTGGTCGATAGAGATGTCATCTTTAAAATGCCACT
CAAAGATACTGATCTTGTTAGAGTTTTAACTCATCAACTCACTGAAACTGGTCTTTTGAA
ACAANA
Length of 3' end seq. 486
Connected seq. ID VHF883P
Connected seq. 
>VHF883P.Seq
GATNACATTTTTCTTTTTCAATACTCGCTCGCTTAACACACAAATTGTTGGAAAACAACA
TTTATTTAATCTATTTTTAAAAATATATATATTTGNGTTTGANGNGTGTGTGTATATTAT
ACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAAAA
GGNNNAAAAAAA----------GATGGTAGAATGGACNCTATCGATGCATTCCATGAAAA
CCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGATATTGTTAGACC
ATTACCATCANCTTTACCAGATNTTAAAGCNCTNTCTGCAAAGATTAGAAAGAATGAAGA
GGAATCATTGAATATGATCGCCAATAAATACATCAACCAAGAAGTCAATGAAAAAACTGC
AACCGAAGTATTGGATCAAATNTATGAAGCTTACAAAACCAATAATNTCTTTGATAAGGA
TATCATTGAACACGATAAAAACACCATTAGAGAAGCAAATGGTGACGTTGCAATTCCAGA
ATCTATGTACTTTGAATATGATACCACNTTTAGTGATTTGGTCGATAGAGATGTCATCTT
TAAAATGCCACTCAAAGATACTGATCTTGTTAGAGTTTTAACTCATCAACTCACTGAAAC
TGGTCTTTTGAAACAANA
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -