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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF880
Library VH
(Link to library)
Clone ID VHF880
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11527-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF880 (VHF880Q) /CSM/VH/VHF8-D/VHF880Q.Seq.d/
ATGGCTTCACCGTTGAATCATTACAAAAACAAGGTTATGAAGCCATTTACTTGGGTATTG
GTATGCCTGAACCAAAGATTGATCCAGTCTTTAACGANTTGACAAGTGATCAAGGTTTTT
TCAGTAGTAAAGANTTCTTACCAAAAGTTAGCAAAGCCTCAAAGGCTGGTATGTGCGGTT
GTAAATCACAATTACCACAACTCAATGGTAGAGTTATTGTATTGGGTGCTGGTGATACCG
CTTTCGATTGTGCTACCTCTGCTTTCCGTTGCGGTGCATCACGTGTTACCGTTTGTTTCC
GTCGNGGTTTCTCTGATATGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
GFTVESLQKQGYEAIYLGIGMPEPKIDPVFNXLTSDQGFFSSKXFLPKVSKASKAGMCGC
KSQLPQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFSD---
Translated Amino Acid sequence (All Frames) 
Frame A:
masplnhyknkvmkpftwvlvclnqrliqsltx*qvikvfsvvkxsyqklakpqrlvcav
vnhnyhnsmvellywvlviplsivlpllsvavhhvlpfvsvxvsli---


Frame B:
wlhr*iitktrl*shllgywya*tkd*ssl*rxdk*srffq**rxltks*qslkgwyvrl
*ititttqw*sycigcw*yrfrlcylcfplrcitcyrlfpsxfl*y---


Frame C:
GFTVESLQKQGYEAIYLGIGMPEPKIDPVFNXLTSDQGFFSSKXFLPKVSKASKAGMCGC
KSQLPQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFSD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN326 (VHN326Q) /CSM/VH/VHN3-B/VHN326Q.Seq.d/                        617   e-176
VHH261 (VHH261Q) /CSM/VH/VHH2-C/VHH261Q.Seq.d/                        617   e-176
VHG671 (VHG671Q) /CSM/VH/VHG6-C/VHG671Q.Seq.d/                        617   e-176
VHF880 (VHF880Q) /CSM/VH/VHF8-D/VHF880Q.Seq.d/                        617   e-176
VHB244 (VHB244Q) /CSM/VH/VHB2-B/VHB244Q.Seq.d/                        617   e-176
SHK871 (SHK871Q) /CSM/SH/SHK8-C/SHK871Q.Seq.d/                        617   e-176
CHP678 (CHP678Q) /CSM/CH/CHP6-D/CHP678Q.Seq.d/                        617   e-176
CHI778 (CHI778Q) /CSM/CH/CHI7-D/CHI778Q.Seq.d/                        617   e-176
SHD855 (SHD855Q) /CSM/SH/SHD8-C/SHD855Q.Seq.d/                        321   4e-87
VHB727 (VHB727Q) /CSM/VH/VHB7-B/VHB727Q.Seq.d/                        145   5e-34
own update 2003. 6.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF545064) Dictyostelium discoideum dihydropyrimidine dehydr...   615   e-172  1
(BJ425844) Dictyostelium discoideum cDNA clone:ddv57d07, 5' ...   615   e-172  1
(BJ422340) Dictyostelium discoideum cDNA clone:ddv45i16, 5' ...   615   e-172  1
(BJ422054) Dictyostelium discoideum cDNA clone:ddv44m18, 5' ...   615   e-172  1
(BJ421522) Dictyostelium discoideum cDNA clone:ddv42p20, 5' ...   615   e-172  1
(BJ418592) Dictyostelium discoideum cDNA clone:ddv33g12, 5' ...   615   e-172  1
(BJ397268) Dictyostelium discoideum cDNA clone:dds45n18, 5' ...   615   e-172  1
(BJ370372) Dictyostelium discoideum cDNA clone:ddc53k20, 5' ...   615   e-172  1
(BJ366689) Dictyostelium discoideum cDNA clone:ddc39l19, 5' ...   615   e-172  1
(BJ393537) Dictyostelium discoideum cDNA clone:dds31n14, 5' ...   321   9e-84  1
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FT1) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   214   1e-54
EU652316_1(EU652316|pid:none) Adineta vaga dihydrogenpyrimidine ...   152   3e-36
EU850439_1(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ...   152   3e-36
BC080003_1(BC080003|pid:none) Xenopus laevis MGC81821 protein, m...   146   2e-34
(A8XKG6) RecName: Full=Probable dihydropyrimidine dehydrogenase ...   141   6e-33
(Q12882) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   140   1e-32
A54718(A54718) dihydropyrimidine dehydrogenase (NADP) (EC 1.3.1....   140   1e-32
(Q5R895) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   140   1e-32
AK291217_1(AK291217|pid:none) Homo sapiens cDNA FLJ76825 complet...   140   1e-32
BC131778_1(BC131778|pid:none) Homo sapiens dihydropyrimidine deh...   140   1e-32
protein update 2009. 7. 5
PSORT 

 psg: 0.70  gvh: 0.35  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHF880 is cyt
5' end seq. ID VHF880F
5' end seq. 
>VHF880F.Seq
ATGGCTTCACCGTTGAATCATTACAAAAACAAGGTTATGAAGCCATTTACTTGGGTATTG
GTATGCCTGAACCAAAGATTGATCCAGTCTTTAACGANTTGACAAGTGATCAAGGTTTTT
TCAGTAGTAAAGANTTCTTACCAAAAGTTAGCAAAGCCTCAAAGGCTGGTATGTGCGGTT
GTAAATCACAATTACCACAACTCAATGGTAGAGTTATTGTATTGGGTGCTGGTGATACCG
CTTTCGATTGTGCTACCTCTGCTTTCCGTTGCGGTGCATCACGTGTTACCGTTTGTTTCC
GTCGNGGTTTCTCTGATATGNNNNNNNNNN
Length of 5' end seq. 330
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -