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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF875
Library VH
(Link to library)
Clone ID VHF875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15307-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF875 (VHF875Q) /CSM/VH/VHF8-D/VHF875Q.Seq.d/
XXXXXXXXXXTCACATTTACCAGTAGTTTACATTTTCACTCATGACTCTGTTGGTGTTGG
TGAAGATGGTCCAACTCATCAACCAGTTGAAACCGTTTCAGGTCTTCGTATGATTCCAAA
CTTGGATGTCATTCGTCCAGCCGATCCAGGAGAAACAGCTGCTGCTTTNTCCTTGGCTTA
TGNTCGTGCCGATGGTCCAACCNTTTTATCATTAACTCGTCAAAATCTTCCATTCNTCCC
AGGTACCGCTCAAAAGAAGAGAGAAGGTANTNTCAGAGGTGGTTACATTGTCGTTAGTGA
AACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATTGTGTTGA
AGCCGCTAAATTATTAGGTGATGATATTCGTGTCGTNTCTATGCCATGCACTGAACTTTT
CGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAAATCGTAT
CGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATGGTAAAGT
CATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATGAAACAATTAGG
TATGACTTCTGAAAATTTAGTAAACATTTCAAAACAATAAAAATAAAATAAAATAAATCA
AAATCAAAATGCTAAATTA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---HLPVVYIFTHDSVGVGEDGPTHQPVETVSGLRMIPNLDVIRPADPGETAAAXSLAYX
RADGPTXLSLTRQNLPFXPGTAQKKREGXXRGGYIVVSETAPLRMILIATGSEVQHCVEA
AKLLGDDIRVVSMPCTELFDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGKVI
GIDRFGMSAPGNAVMKQLGMTSENLVNISKQ*k*nkinqnqnakl
Translated Amino Acid sequence (All Frames) 
Frame A:
---hiyq*ftfslmtllvlvkmvqlinqlkpfqvfv*fqtwmsfvqpiqekqlllxpwlm
xvpmvqpfyh*lvkifhssqvplkrrekvxsevvtlslvkplh*e*s*lplvqkfnivlk
plny*vmifvsxlchalnfsivnqmntnnpyfqvvveivslwklvslhsginmlvlmvks
lvlidlvclhqvmpl*nn*v*llki**tfqnnknkik*ikikmln


Frame B:
---tftsslhfhs*lcwcw*rwsnssts*nrfrssydsklgchsssrsrrnsccfxlglx
scrwsnxfiinsskssixpryrskeerrxxqrwlhcr**nrsikndlnchwfrsstlc*s
r*iir**yscrxyamh*tfrssik*iqtirtskwl*ksyrygswchfilv*icws*w*sh
wy**iwyvctr*cryetirydf*kfskhfktikik*nkskskc*i


Frame C:
---HLPVVYIFTHDSVGVGEDGPTHQPVETVSGLRMIPNLDVIRPADPGETAAAXSLAYX
RADGPTXLSLTRQNLPFXPGTAQKKREGXXRGGYIVVSETAPLRMILIATGSEVQHCVEA
AKLLGDDIRVVSMPCTELFDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGKVI
GIDRFGMSAPGNAVMKQLGMTSENLVNISKQ*k*nkinqnqnakl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF875 (VHF875Q) /CSM/VH/VHF8-D/VHF875Q.Seq.d/                       1148   0.0
VHQ229 (VHQ229Q) /CSM/VH/VHQ2-B/VHQ229Q.Seq.d/                       1132   0.0
VHQ119 (VHQ119Q) /CSM/VH/VHQ1-A/VHQ119Q.Seq.d/                       1132   0.0
VHP624 (VHP624Q) /CSM/VH/VHP6-A/VHP624Q.Seq.d/                       1132   0.0
VHP168 (VHP168Q) /CSM/VH/VHP1-C/VHP168Q.Seq.d/                       1132   0.0
VHN785 (VHN785Q) /CSM/VH/VHN7-D/VHN785Q.Seq.d/                       1132   0.0
VHM858 (VHM858Q) /CSM/VH/VHM8-C/VHM858Q.Seq.d/                       1132   0.0
VHK796 (VHK796Q) /CSM/VH/VHK7-D/VHK796Q.Seq.d/                       1132   0.0
VHK769 (VHK769Q) /CSM/VH/VHK7-C/VHK769Q.Seq.d/                       1132   0.0
VHK543 (VHK543Q) /CSM/VH/VHK5-B/VHK543Q.Seq.d/                       1132   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440154) Dictyostelium discoideum cDNA clone:ddv42f20, 3' ...  1150   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...  1134   0.0    1
(BJ446078) Dictyostelium discoideum cDNA clone:ddv61g17, 3' ...  1134   0.0    1
(BJ445236) Dictyostelium discoideum cDNA clone:ddv58j21, 3' ...  1134   0.0    1
(BJ443340) Dictyostelium discoideum cDNA clone:ddv52j17, 3' ...  1134   0.0    1
(BJ441330) Dictyostelium discoideum cDNA clone:ddv46j11, 3' ...  1134   0.0    1
(BJ439285) Dictyostelium discoideum cDNA clone:ddv39p24, 3' ...  1134   0.0    1
(BJ437644) Dictyostelium discoideum cDNA clone:ddv34m20, 3' ...  1134   0.0    1
(BJ432708) Dictyostelium discoideum cDNA clone:ddv19b18, 3' ...  1134   0.0    1
(BJ430650) Dictyostelium discoideum cDNA clone:ddv8j06, 3' e...  1134   0.0    1
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556J0) RecName: Full=Transketolase;          Short=TK;        ...   375   e-103
AM746676_3991(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   256   4e-67
CP001032_3788(CP001032|pid:none) Opitutus terrae PB90-1, complet...   252   6e-66
AJ821796_1(AJ821796|pid:none) Guillardia theta partial mRNA for ...   249   4e-65
(A6YB01) RecName: Full=Transketolase;          Short=TK;        ...   249   7e-65
EF216685_1(EF216685|pid:none) Bigelowiella natans transketolase ...   248   9e-65
EF216683_1(EF216683|pid:none) Karlodinium micrum transketolase m...   246   3e-64
EF216682_1(EF216682|pid:none) Karlodinium micrum transketolase m...   242   9e-63
AP009484_999(AP009484|pid:none) Macrococcus caseolyticus JCSC540...   209   5e-53
CP001339_2861(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...   209   5e-53
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for VHF875 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF875Z
3' end seq. 
>VHF875Z.Seq
NNNNNNNNNNTCACATTTACCAGTAGTTTACATTTTCACTCATGACTCTGTTGGTGTTGG
TGAAGATGGTCCAACTCATCAACCAGTTGAAACCGTTTCAGGTCTTCGTATGATTCCAAA
CTTGGATGTCATTCGTCCAGCCGATCCAGGAGAAACAGCTGCTGCTTTNTCCTTGGCTTA
TGNTCGTGCCGATGGTCCAACCNTTTTATCATTAACTCGTCAAAATCTTCCATTCNTCCC
AGGTACCGCTCAAAAGAAGAGAGAAGGTANTNTCAGAGGTGGTTACATTGTCGTTAGTGA
AACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATTGTGTTGA
AGCCGCTAAATTATTAGGTGATGATATTCGTGTCGTNTCTATGCCATGCACTGAACTTTT
CGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAAATCGTAT
CGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATGGTAAAGT
CATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATGAAACAATTAGG
TATGACTTCTGAAAATTTAGTAAACATTTCAAAACAATAAAAATAAAATAAAATAAATCA
AAATCAAAATGCTAAATTA
Length of 3' end seq. 679
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -