AFN839
Library AF
(Link to library)
Clone ID AFN839
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFN839Z
(Link to Original site)
Representative DNA sequence
>AFN839 (AFN839Q) /CSM/AF/AFN8-B/AFN839Q.Seq.d/
XXXXXXXXXXGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTG
GTAAAGTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCG
ATGAAAAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTG
GTAAAGTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTA
AGGTTGCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGG
TTGAATTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAAT
TAGGTGAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAA
ATGATGTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTG
ATGACAAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTG
AATTCATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATA
ATGTTGAATCTAAAAAAGATTCTTCTGCTAAACATGATGAATTATAAATAAATTTAATAA
ATATATAATAATANTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGG
KVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKL
GEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVE
FIQDNAAIEFKLPSSQTDDNVESKKDSSAKHDEL*inlini**xf


Translated Amino Acid sequence (All Frames)
Frame A:
---VDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGG
KVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKL
GEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVE
FIQDNAAIEFKLPSSQTDDNVESKKDSSAKHDEL*inlini**xf


Frame B:
---si*rnshnkqliwvslvklfqpslliqlpiklvtismkkkpshsipspngskmslvv
kflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnstlhgaviarillqstin*
vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkkiqslmkvkemii*tlln
sfkitlplnsnyhhlklmimlnlkkilllnmmnyk*i**iynnx


Frame C:
---ryeeipttsnsygslw*scsshlc*fscq*sslqfr*krnlliryrlqmdprchww*
sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilrsmvrslqescsnlr*ir
*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrksnll*rskk*syelc*i
hsr*rch*iqitiisn***c*i*krffc*t**iinkfnkyiiix


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN839 (AFN839Q) /CSM/AF/AFN8-B/AFN839Q.Seq.d/ 1247 0.0
AFO829 (AFO829Q) /CSM/AF/AFO8-B/AFO829Q.Seq.d/ 1245 0.0
AFM402 (AFM402Q) /CSM/AF/AFM4-A/AFM402Q.Seq.d/ 1245 0.0
AFL565 (AFL565Q) /CSM/AF/AFL5-C/AFL565Q.Seq.d/ 1245 0.0
AFH647 (AFH647Q) /CSM/AF/AFH6-B/AFH647Q.Seq.d/ 1245 0.0
VFM432 (VFM432Q) /CSM/VF/VFM4-B/VFM432Q.Seq.d/ 1243 0.0
AHO764 (AHO764Q) /CSM/AH/AHO7-C/AHO764Q.Seq.d/ 1243 0.0
AFN252 (AFN252Q) /CSM/AF/AFN2-C/AFN252Q.Seq.d/ 1243 0.0
AFL789 (AFL789Q) /CSM/AF/AFL7-D/AFL789Q.Seq.d/ 1243 0.0
AFK581 (AFK581Q) /CSM/AF/AFK5-D/AFK581Q.Seq.d/ 1243 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end, single read. 599 e-167 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 2e-09 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 4e-08 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 4e-08 1
BM280519|BM280519.1 ki01h03.y1 Ascaris suum L4 pSPORT1 Zarlenga v1 Ascaris suum cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence. 68 2e-07 1
AW255071|AW255071.1 ML1365 peppermint glandular trichome Mentha x piperita cDNA, mRNA sequence. 64 2e-06 1
BM315730|BM315730.1 fw64d09.y1 Sugano SJD adult male Danio rerio cDNA clone 5612584 5' similar to SW:ER60_HUMAN P30101 PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR ;, mRNA sequence. 62 9e-06 1
BJ576792|BJ576792.1 Ipomoea nil cDNA clone:jm33b20, 3' end, single read. 60 4e-05 1
BM308748|BM308748.1 sak49h10.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-6523 5' similar to TR:P93358 P93358 PROTEIN DISULFIDE-ISOMERASE PRECURSOR. ;, mRNA sequence. 60 4e-05 1
BU795021|S34275 protein disulfide-isomerase homolog precursor - fluke (Schistosoma mansoni), mRNA sequence. 60 4e-05 1
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 170 4e-41
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 168 1e-40
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 163 5e-39
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 162 1e-38
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 157 3e-37
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 154 2e-36
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 154 3e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 151 1e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 149 5e-35
protein update 2009. 4.25
PSORT

psg: 0.84 gvh: 0.38 alm: 0.43 top: 0.43 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 1.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: nuclear
24.0 %: cytoskeletal
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for AFN839 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN839Z
3' end seq.
>AFN839Z.Seq
----------GGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTG
GTAAAGTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCG
ATGAAAAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTG
GTAAAGTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTA
AGGTTGCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGG
TTGAATTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAAT
TAGGTGAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAA
ATGATGTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTG
ATGACAAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTG
AATTCATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATA
ATGTTGAATCTAAAAAAGATTCTTCTGCTAAACATGATGAATTATAAATAAATTTAATAA
ATATATAATAATANTTT
Length of 3' end seq. 667
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -