VHF823
Library VH
(Link to library)
Clone ID VHF823
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF823 (VHF823Q) /CSM/VH/VHF8-A/VHF823Q.Seq.d/
XXXXXXXXXXTGATGCAANTCAATTCANTGNTNATCCAATCGTATNTCNCANTCCAAAAC
CAGTTGAAAATAATATNANCTCNTNTACACCNCTTNAAANTNCNAATANAANTCCANANT
ATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---DAXQFXXXPIVXXXPKPVENNXXSXTPLXXXNXXPXY


Translated Amino Acid sequence (All Frames)
Frame A:
---DAXQFXXXPIVXXXPKPVENNXXSXTPLXXXNXXPXY


Frame B:
---mqxnsxxiqsyxxxqnqlkiixxxxhxxkxxixxxxi


Frame C:
---cxsixxxsnrxsxskts*k*yxlxytxxxxxxxsxx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF823 (VHF823Q) /CSM/VH/VHF8-A/VHF823Q.Seq.d/ 105 1e-22
CHF339 (CHF339Q) /CSM/CH/CHF3-B/CHF339Q.Seq.d/ 90 8e-18
AHB782 (AHB782Q) /CSM/AH/AHB7-D/AHB782Q.Seq.d/ 90 8e-18
VHK669 (VHK669Q) /CSM/VH/VHK6-C/VHK669Q.Seq.d/ 86 1e-16
VHI338 (VHI338Q) /CSM/VH/VHI3-B/VHI338Q.Seq.d/ 86 1e-16
SHC208 (SHC208Q) /CSM/SH/SHC2-A/SHC208Q.Seq.d/ 86 1e-16
CHP255 (CHP255Q) /CSM/CH/CHP2-C/CHP255Q.Seq.d/ 86 1e-16
CHK452 (CHK452Q) /CSM/CH/CHK4-C/CHK452Q.Seq.d/ 86 1e-16
CHF205 (CHF205Q) /CSM/CH/CHF2-A/CHF205Q.Seq.d/ 86 1e-16
AHG186 (AHG186Q) /CSM/AH/AHG1-D/AHG186Q.Seq.d/ 86 1e-16

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439959) Dictyostelium discoideum cDNA clone:ddv42n06, 3' ... 105 3e-19 1
(BJ378659) Dictyostelium discoideum cDNA clone:ddc32n09, 3' ... 90 2e-14 1
(BJ348916) Dictyostelium discoideum cDNA clone:dda34d21, 3' ... 90 2e-14 1
(BJ443336) Dictyostelium discoideum cDNA clone:ddv52i18, 3' ... 86 3e-13 1
(BJ441652) Dictyostelium discoideum cDNA clone:ddv47l09, 3' ... 86 3e-13 1
(BJ438282) Dictyostelium discoideum cDNA clone:ddv36o22, 3' ... 86 3e-13 1
(BJ404332) Dictyostelium discoideum cDNA clone:dds28o02, 3' ... 86 3e-13 1
(BJ403969) Dictyostelium discoideum cDNA clone:dds26j22, 3' ... 86 3e-13 1
(BJ403766) Dictyostelium discoideum cDNA clone:dds26p02, 3' ... 86 3e-13 1
(BJ386097) Dictyostelium discoideum cDNA clone:ddc57k04, 3' ... 86 3e-13 1
dna update 2008.10.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg... 39 0.074

protein update 2009. 3. 4
PSORT

psg: 0.75 gvh: 0.39 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VHF823 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF823Z
3' end seq.
>VHF823Z.Seq
NNNNNNNNNNTGATGCAANTCAATTCANTGNTNATCCAATCGTATNTCNCANTCCAAAAC
CAGTTGAAAATAATATNANCTCNTNTACACCNCTTNAAANTNCNAATANAANTCCANANT
ATT
Length of 3' end seq. 123
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -