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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF812
Library VH
(Link to library)
Clone ID VHF812
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15818-1|Contig-U16198-1
Original site URL
Representative seq. ID VHF812P
(Link to Original site)
Representative DNA sequence 
>VHF812 (VHF812Q) /CSM/VH/VHF8-A/VHF812Q.Seq.d/
AATTTAATATAACANTAGTATTTTTAGATTATAATATAAAATTATAAACACANTTAAAAA
AAAAAAAAAAAAAAAAAAAATTTANNNAAAAAANNCAAAAAAATTTTNGGGGGGAAAANN
AAAAXXXXXXXXXXCAAATAATCAAAGAATGTATAAAACAATTCGTATNAAAAAGAATGG
TGGTATGAAAATGGGTGGTGATATAATGNTAAATTATATGGGTGGTAATAATGGTAATAA
TAATGATAGATTAGCAGCANCAATGACAACAACAACAACANCAACACCAGAGAGTTCTTT
AGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAA
TATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTC
AACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGC
AAAATTGGGTGCAAACTTTTTCTTTACACTTGATCAACAACATGCTTTAGCTTCAACTTC
AAATTTATCATCATCAACTAATAATAANTCTGCCACTGCTACTACCACTGCTACTACCAC
CACCACCACCACTGGTGGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAAC
ACCTGTATATCTTACAAATTCACCAAAAACATTGGAAAGAAAGAATACAAGTTNAT
sequence update 2002.10.25
Translated Amino Acid sequence 
i*ynxsifrl*YKIINTXKKKKKKKKIXXKXXKKFXGGKXK---

---NNQRMYKTIRXKKNGGMKMGGDIMXNYMGGNNGNNNDRLAAXMTTTTTXTPESSLEL
LPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRSTSSQDIIVSGTATTSKSSMAKL
GANFFFTLDQQHALASTSNLSSSTNNXSATATTTATTTTTTTGGNKDNINDIMQFPSTPV
YLTNSPKTLERKNTSX
Translated Amino Acid sequence (All Frames) 
Frame A:
nli*x*yf*iii*nykhx*kkkkkkknlxkkxkkixggkxk---

---qiikecikqfvxkrmvv*kwvvi*x*iiwvvimviimid*qxq*qqqqxqhqrvl*n
yyqiqqskhhqqih*lq*ifkqmhiqlmvillvhhlivqqvvkilllvvlqplqnhqwqn
wvqtfslhlinnml*lqlqiyhhqliixlplllplllppppplvvikiilmilcnshqhl
yilqihqkhwkeriqvx

Frame B:
i*ynxsifrl*YKIINTXKKKKKKKKIXXKXXKKFXGGKXK---

---k*sknv*nnsyxkewwyengw*ynxklygw**w*****issxndnnnnxntreffri
itkynrasiinkfincneysnkctfnsw*yfwcii*sfnk*sryyc*wycnhfkiingki
gcklflyt*sttcfsfnfkfiiin***xchcyyhcyyhhhhhww**r*y**yyaipintc
isykftknigkkeykx

Frame C:
fnitxvfldynikl*txlkkkkkkkkfxxkxqknfxgexx---

---NNQRMYKTIRXKKNGGMKMGGDIMXNYMGGNNGNNNDRLAAXMTTTTTXTPESSLEL
LPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRSTSSQDIIVSGTATTSKSSMAKL
GANFFFTLDQQHALASTSNLSSSTNNXSATATTTATTTTTTTGGNKDNINDIMQFPSTPV
YLTNSPKTLERKNTSX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF812 (VHF812Q) /CSM/VH/VHF8-A/VHF812Q.Seq.d/                        557   e-158
SHF476 (SHF476Q) /CSM/SH/SHF4-D/SHF476Q.Seq.d/                        545   e-154
VHC426 (VHC426Q) /CSM/VH/VHC4-B/VHC426Q.Seq.d/                        541   e-153
SHL335 (SHL335Q) /CSM/SH/SHL3-B/SHL335Q.Seq.d/                        541   e-153
SHJ804 (SHJ804Q) /CSM/SH/SHJ8-A/SHJ804Q.Seq.d/                        541   e-153
SHE742 (SHE742Q) /CSM/SH/SHE7-B/SHE742Q.Seq.d/                        541   e-153
SHD170 (SHD170Q) /CSM/SH/SHD1-C/SHD170Q.Seq.d/                        541   e-153
SFE464 (SFE464Q) /CSM/SF/SFE4-C/SFE464Q.Seq.d/                        541   e-153
FC-BS13 (FC-BS13Q) /CSM/FC/FC-BS/FC-BS13Q.Seq.d/                      541   e-153
CHM359 (CHM359Q) /CSM/CH/CHM3-C/CHM359Q.Seq.d/                        541   e-153
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439926) Dictyostelium discoideum cDNA clone:ddv42h04, 3' ...   624   0.0    3
(BJ348565) Dictyostelium discoideum cDNA clone:dda33k14, 3' ...   609   0.0    3
(BJ405111) Dictyostelium discoideum cDNA clone:dds30k17, 3' ...   609   0.0    3
(BJ408585) Dictyostelium discoideum cDNA clone:dds46f09, 3' ...   609   0.0    3
(BJ348847) Dictyostelium discoideum cDNA clone:dda34f18, 3' ...   609   0.0    3
(BJ384779) Dictyostelium discoideum cDNA clone:ddc50n13, 3' ...   597   0.0    3
(BJ383006) Dictyostelium discoideum cDNA clone:ddc46f15, 3' ...   609   0.0    3
(BJ406307) Dictyostelium discoideum cDNA clone:dds34h20, 3' ...   613   0.0    2
(BJ405857) Dictyostelium discoideum cDNA clone:dds33d11, 3' ...   609   0.0    2
(AU284990) Dictyostelium discoideum gamete cDNA clone:FC-BS1...   595   0.0    3
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177464_1(AF177464|pid:none) Drosophila melanogaster Tob homolo...    35   1.8
BT010303_1(BT010303|pid:none) Drosophila melanogaster LD04013 fu...    35   1.8
CR382132_181(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    34   3.9
FM992688_957(FM992688|pid:none) Candida dubliniensis CD36 chromo...    33   8.7
FM992688_1317(FM992688|pid:none) Candida dubliniensis CD36 chrom...    33   8.7
protein update 2009. 7. 5
PSORT 

 psg: 0.33  gvh: 0.16  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.12
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHF812 is nuc
5' end seq. ID VHF812F
5' end seq. 
>VHF812F.Seq
AATTTAATATAACANTAGTATTTTTAGATTATAATATAAAATTATAAACACANTTAAAAA
AAAAAAAAAAAAAAAAAAAATTTANNNAAAAAANNCAAAAAAATTTTNGGGGGGAAAANN
AAAANNNNNNNNNN
Length of 5' end seq. 134
3' end seq. ID VHF812Z
3' end seq. 
>VHF812Z.Seq
NNNNNNNNNNCAAATAATCAAAGAATGTATAAAACAATTCGTATNAAAAAGAATGGTGGT
ATGAAAATGGGTGGTGATATAATGNTAAATTATATGGGTGGTAATAATGGTAATAATAAT
GATAGATTAGCAGCANCAATGACAACAACAACAACANCAACACCAGAGAGTTCTTTAGAA
TTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAATATT
CAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTCAACA
AGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGCAAAA
TTGGGTGCAAACTTTTTCTTTACACTTGATCAACAACATGCTTTAGCTTCAACTTCAAAT
TTATCATCATCAACTAATAATAANTCTGCCACTGCTACTACCACTGCTACTACCACCACC
ACCACCACTGGTGGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAACACCT
GTATATCTTACAAATTCACCAAAAACATTGGAAAGAAAGAATACAAGTTNAT
Length of 3' end seq. 592
Connected seq. ID VHF812P
Connected seq. 
>VHF812P.Seq
AATTTAATATAACANTAGTATTTTTAGATTATAATATAAAATTATAAACACANTTAAAAA
AAAAAAAAAAAAAAAAAAAATTTANNNAAAAAANNCAAAAAAATTTTNGGGGGGAAAANN
AAAA----------CAAATAATCAAAGAATGTATAAAACAATTCGTATNAAAAAGAATGG
TGGTATGAAAATGGGTGGTGATATAATGNTAAATTATATGGGTGGTAATAATGGTAATAA
TAATGATAGATTAGCAGCANCAATGACAACAACAACAACANCAACACCAGAGAGTTCTTT
AGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAA
TATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTC
AACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGC
AAAATTGGGTGCAAACTTTTTCTTTACACTTGATCAACAACATGCTTTAGCTTCAACTTC
AAATTTATCATCATCAACTAATAATAANTCTGCCACTGCTACTACCACTGCTACTACCAC
CACCACCACCACTGGTGGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAAC
ACCTGTATATCTTACAAATTCACCAAAAACATTGGAAAGAAAGAATACAAGTTNAT
Length of connected seq. 706
Full length Seq ID -
Full length Seq. -
Length of full length seq. -