VHF781
Library VH
(Link to library)
Clone ID VHF781
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16440-1
Original site URL
Representative seq. ID VHF781P
(Link to Original site)
Representative DNA sequence
>VHF781 (VHF781Q) /CSM/VH/VHF7-D/VHF781Q.Seq.d/
TTGGCCTACTGGATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTT
ATTTATTTTTATAGCGATTATTGTTGGCTTATCACTTTCACAAAATACTATTCCAACTTA
TAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTA
TGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTAT
TGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATA
TTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAAT
TTCAGTATCAAATGATGCANGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGT
TGTATCAGTTTCACCACATTTAXXXXXXXXXXTGCGATGANTCNTCAATGCAATCTTATT
CCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATT
GTTATATGACCCAACAAGCNCAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATT
TTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTA
CCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCAC
AATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACNTATATCAAATCAAAAG
GTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAG
AGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTG
TTGTTATTGCTANTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGA
ATCCAGATTTCAAACAAAAATTATTAAAAAGGGTTGGTTTTTCAAAGGTCGGTCCAAAAT
ATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATG
ATGATGCTCAAATTTTAAAGNATAANATTTACAAGATAACGA
sequence update 2002.10.25
Translated Amino Acid sequence
WPTGYKQIGGNYKMKISSILFIFIAIIVGLSLSQNTIPTYKQNSINWKQFQPLYTNKDDY
VLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQI
SVSNDAXQTFSTSAVFPHKVVSVSPHL---

---CDXSSMQSYSTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYE
SADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAAT
QCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAXLALAGLGGFGFYVFKNPDFKQKL
LKRVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILKXXIYKIT


Translated Amino Acid sequence (All Frames)
Frame A:
laywi*tnwrkl*nedfiyfiyfysdycwlitftkyysnl*akqh*leaistiiyk*r*l
cincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilwknpn
fsik*cxsnifnlssfst*scisfttf---

---CDXSSMQSYSTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYE
SADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAAT
QCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAXLALAGLGGFGFYVFKNPDFKQKL
LKRVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILKXXIYKIT

Frame B:
WPTGYKQIGGNYKMKISSILFIFIAIIVGLSLSQNTIPTYKQNSINWKQFQPLYTNKDDY
VLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYGKTQI
SVSNDAXQTFSTSAVFPHKVVSVSPHL---

---amxxqcnliplvvf*vkkqliellnqipivi*pnkxkfqinivnvqskilnvilvtk
vqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkxisnqkvseeslph
nv*vvlmqlihqrlscvhqkilqvvakvgslvllllxll*lvlvvlvstflriqisnkny
*kglvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*xixftr*r

Frame C:
glldinkleeiik*rfhlfylfl*rlllayhfhkilfqlisktaligsnfnhyiqikmim
y*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlmekpkf
qyqmmxvkhfqpqqffhiklyqfhhi---

---r*xxnailfhslyfr*knnl*nc*tkyqllydptsxnfk*il*mysrrf*m*ywlrk
crr*qfr**wfylwysiwifrtiels*incfticsnh*rklytrsnxyqikrfqksrcht
mcrwc*cnlftrdchvsikkffkwwqrldrwccycxscfswswwfwflrf*esrfqtkii
kkgwffkgrski*cyry*tklis***iwy*r**csnfkx*xlqdn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF781 (VHF781Q) /CSM/VH/VHF7-D/VHF781Q.Seq.d/ 2117 0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/ 1263 0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/ 1263 0.0
VHH854 (VHH854Q) /CSM/VH/VHH8-C/VHH854Q.Seq.d/ 1263 0.0
CHR654 (CHR654Q) /CSM/CH/CHR6-C/CHR654Q.Seq.d/ 1263 0.0
AHL386 (AHL386Q) /CSM/AH/AHL3-D/AHL386Q.Seq.d/ 1263 0.0
VHJ788 (VHJ788Q) /CSM/VH/VHJ7-D/VHJ788Q.Seq.d/ 1261 0.0
VHD665 (VHD665Q) /CSM/VH/VHD6-C/VHD665Q.Seq.d/ 1261 0.0
VHO134 (VHO134Q) /CSM/VH/VHO1-B/VHO134Q.Seq.d/ 1259 0.0
VHI424 (VHI424Q) /CSM/VH/VHI4-A/VHI424Q.Seq.d/ 1259 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ440138) Dictyostelium discoideum cDNA clone:ddv42b21, 3' ... 1287 0.0 1
(BJ446610) Dictyostelium discoideum cDNA clone:ddv63d08, 3' ... 1263 0.0 1
(BJ441803) Dictyostelium discoideum cDNA clone:ddv47m23, 3' ... 1263 0.0 1
(BJ441421) Dictyostelium discoideum cDNA clone:ddv46l14, 3' ... 1263 0.0 1
(BJ386258) Dictyostelium discoideum cDNA clone:ddc57k14, 3' ... 1263 0.0 1
(BJ354526) Dictyostelium discoideum cDNA clone:dda53l21, 3' ... 1263 0.0 1
(BJ441599) Dictyostelium discoideum cDNA clone:ddv47p06, 3' ... 1259 0.0 1
(BJ445823) Dictyostelium discoideum cDNA clone:ddv60b24, 3' ... 1255 0.0 1
(BJ441603) Dictyostelium discoideum cDNA clone:ddv47a10, 3' ... 1255 0.0 1
(BJ438571) Dictyostelium discoideum cDNA clone:ddv37g12, 3' ... 1255 0.0 1
dna update 2008.10.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 74 1e-11
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr... 65 3e-09
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ... 65 3e-09
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ... 65 3e-09
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c... 64 1e-08
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor... 63 2e-08
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ... 63 2e-08
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro... 63 2e-08
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=... 62 5e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor... 60 1e-07
protein update 2009. 7. 5
PSORT

psg: 0.65 gvh: 0.67 alm: 0.17 top: 0.40 tms: 0.13 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
24.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHF781 is end

5' end seq. ID VHF781F
5' end seq.
>VHF781F.Seq
TTGGCCTACTGGATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTT
ATTTATTTTTATAGCGATTATTGTTGGCTTATCACTTTCACAAAATACTATTCCAACTTA
TAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTA
TGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTAT
TGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATA
TTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAAT
TTCAGTATCAAATGATGCANGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGT
TGTATCAGTTTCACCACATTTANNNNNNNNNN
Length of 5' end seq. 452
3' end seq. ID VHF781Z
3' end seq.
>VHF781Z.Seq
NNNNNNNNNNTGCGATGANTCNTCAATGCAATCTTATTCCACTCGTTGTATTTTAGGTGA
AAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCNCA
AATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGA
AAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATC
TTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGA
AAATTGTACACCAGGTCAAACNTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCAC
ACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAA
AAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTANTCTTGCTTT
AGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATT
ATTAAAAAGGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACC
AAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAGNA
TAANATTTACAAGATAACGA
Length of 3' end seq. 680
Connected seq. ID VHF781P
Connected seq.
>VHF781P.Seq
TTGGCCTACTGGATATAAACAAATTGGAGGAAATTATAAAATGAAGATTTCATCTATTTT
ATTTATTTTTATAGCGATTATTGTTGGCTTATCACTTTCACAAAATACTATTCCAACTTA
TAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAATAAAGATGATTA
TGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACAAATGGTGGTAT
TGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGTAATGCAGGATA
TTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGAAAAACCCAAAT
TTCAGTATCAAATGATGCANGTCAAACATTTTCAACCTCAGCAGTTTTTCCACATAAAGT
TGTATCAGTTTCACCACATTTA----------TGCGATGANTCNTCAATGCAATCTTATT
CCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATT
GTTATATGACCCAACAAGCNCAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATT
TTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTA
CCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCAC
AATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACNTATATCAAATCAAAAG
GTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAG
AGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTG
TTGTTATTGCTANTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGA
ATCCAGATTTCAAACAAAAATTATTAAAAAGGGTTGGTTTTTCAAAGGTCGGTCCAAAAT
ATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATG
ATGATGCTCAAATTTTAAAGNATAANATTTACAAGATAACGA
Length of connected seq. 1112
Full length Seq ID -
Full length Seq. -
Length of full length seq. -