VHF777
Library VH
(Link to library)
Clone ID VHF777
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID VHF777P
(Link to Original site)
Representative DNA sequence
>VHF777 (VHF777Q) /CSM/VH/VHF7-D/VHF777Q.Seq.d/
CCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTAAAAACA
TCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTAGAGGTT
TCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAGAAAAAG
AATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAACTGAAG
TTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTGCCGTCG
TTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTGTAGATG
ATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTTTAAAGG
GTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAXXXXXXXXXXCTGAAT
TGGGTATCTATCCATGTGTCGATCCATTAGATTCAACNTCATTGATGATGGATCCAAATA
TTATTGGTGTTGAACATTACAAAGTTGCCACCGATGTACAAAAGATCCTCCNTAGAATAT
AAATCACTTCAAGATATTATTGCCATTTTAGGTATGGATGATTTATCTGAAGACCAAAAA
GCAACTGTATTCCGTGCTCGTAAGATTCAACGTTTCTTATCACAACCATTCGAAGTTGCC
CACGCNTTCACCAATATGGAAGGTAGATTCGTTAAACTCTCCGACTCTATCAAAGCCTTC
AAAGGTACCCTCGAAGGTAAATACGATCATCTCCCAGAAGCTGCCTTCTATATGGTTGGT
GGTATCGAAGATGTCGAAATTAAAGCTGCTAAACTCTTAGAATCCGCTGGTAAAGAAGAA
AAGAAAACCACCACTACCTCCACCACTGGTCAAGTCAAAGAAGAAACTGTCAGAGAAAAA
GTTACCAGACTCGTCGATGAAGCTTACAATGNTAAAGTCAAGAAATTAAAGGAATATGGT
GCCTCAACTGCTCACCTTGAAGAATTACGTGCTCAATATGAAAAGAACTTTGAATCTGAA
ATCAGTCAATTAGAAGTTTTATTAAAAAAATAAATTAACTTCCAAAACTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQEKE
YFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIVDD
FQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKL---

---ELGIYPCVDPLDSTSLMMDPNIIGVEHYKVATDVQKILXRI*itsryychfryg*fi
*rpksncipcs*dstflittirscprxhqygr*ir*tlrlyqslqryprr*irssprscl
lygwwyrrcrn*sc*tlrirw*rrkenhhylhhwssqrrncqrksyqtrr*slqx*sqei
kgiwclncsp*ritcsi*kel*i*nqsirsfikkin*lpklk


Translated Amino Acid sequence (All Frames)
Frame A:
pdyyiflkqkcllledylktshklaklqlkpqfvlsqlevskllqltkpqhqhqklhkkk
ntlkrirvf*iknqmknqlkliiqn*tkikvlyik*lvpslmftshtvnyhtsmml*l*m
isklkmskk*lkiltthl*rvksistmfqfqtln---

---lnwvsihvsih*iqxh**wiqillvlnitklppmykrssxeykslqdiiailgmddl
sedqkatvfrarkiqrflsqpfevahaftnmegrfvklsdsikafkgtlegkydhlpeaa
fymvggiedveikaakllesagkeekkttttsttgqvkeetvrekvtrlvdeaynxkvkk
lkeygastahleelraqyeknfeseisqlevllkk*infqn*

Frame B:
liitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststknftrkr
il*ke*esfr*rik*rin*s*lfkikrksrcctssnwcrr*cllptr*itihq*cfncr*
fps*kcrksn*rs*qpifkg*nrfqqcsnfkh*i---

---*igylsmcrsirfnxiddgskyywc*tlqschrctkdpp*ninhfkillpf*vwmiy
lktkkqlysvlvrfnvsyhnhsklptxspiwkvdslnsptlskpskvpskvntiisqklp
siwlvvskmsklkllns*nplvkkkrkpplppplvkskkklsekklpdssmkltmxksrn
*rnmvpqlltlknyvlnmkrtlnlksvn*kfy*knkltsktk

Frame C:
*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQEKE
YFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIVDD
FQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKL---

---ELGIYPCVDPLDSTSLMMDPNIIGVEHYKVATDVQKILXRI*itsryychfryg*fi
*rpksncipcs*dstflittirscprxhqygr*ir*tlrlyqslqryprr*irssprscl
lygwwyrrcrn*sc*tlrirw*rrkenhhylhhwssqrrncqrksyqtrr*slqx*sqei
kgiwclncsp*ritcsi*kel*i*nqsirsfikkin*lpklk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF777 (VHF777Q) /CSM/VH/VHF7-D/VHF777Q.Seq.d/ 2121 0.0
VHK609 (VHK609Q) /CSM/VH/VHK6-A/VHK609Q.Seq.d/ 1217 0.0
VHK519 (VHK519Q) /CSM/VH/VHK5-A/VHK519Q.Seq.d/ 1217 0.0
VHI695 (VHI695Q) /CSM/VH/VHI6-D/VHI695Q.Seq.d/ 1217 0.0
VHE445 (VHE445Q) /CSM/VH/VHE4-B/VHE445Q.Seq.d/ 1217 0.0
VHA544 (VHA544Q) /CSM/VH/VHA5-B/VHA544Q.Seq.d/ 1217 0.0
VFN313 (VFN313Q) /CSM/VF/VFN3-A/VFN313Q.Seq.d/ 1217 0.0
SLH827 (SLH827Q) /CSM/SL/SLH8-B/SLH827Q.Seq.d/ 1217 0.0
SFK675 (SFK675Q) /CSM/SF/SFK6-D/SFK675Q.Seq.d/ 1217 0.0
AHF618 (AHF618Q) /CSM/AH/AHF6-A/AHF618Q.Seq.d/ 1217 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ440173) Dictyostelium discoideum cDNA clone:ddv42j19, 3' ... 1223 0.0 2
(AU061499) Dictyostelium discoideum slug cDNA, clone SLE461. 991 0.0 3
(AU039460) Dictyostelium discoideum slug cDNA, clone SLH827. 991 0.0 3
(AU034441) Dictyostelium discoideum slug cDNA, clone SLC880. 991 0.0 3
(AU034435) Dictyostelium discoideum slug cDNA, clone SLC873. 991 0.0 3
(BJ445790) Dictyostelium discoideum cDNA clone:ddv60l16, 3' ... 991 0.0 2
(BJ445767) Dictyostelium discoideum cDNA clone:ddv60g16, 3' ... 991 0.0 3
(BJ443147) Dictyostelium discoideum cDNA clone:ddv52e05, 3' ... 991 0.0 3
(BJ443127) Dictyostelium discoideum cDNA clone:ddv52a04, 3' ... 991 0.0 3
(BJ442128) Dictyostelium discoideum cDNA clone:ddv48m24, 3' ... 991 0.0 3
dna update 2008.10.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P72247) RecName: Full=ATP synthase subunit beta; EC=3.... 132 8e-42
(Q3YS09) RecName: Full=ATP synthase subunit beta; EC=3.... 138 1e-41
(Q162S9) RecName: Full=ATP synthase subunit beta; EC=3.... 129 1e-41
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;... 129 2e-41
AK159737_1(AK159737|pid:none) Mus musculus osteoclast-like cell ... 129 2e-41
AE016815_382(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 138 2e-41
GN102155_1(GN102155|pid:none) Sequence 6936 from Patent WO200903... 139 3e-41
(Q5ZLC5) RecName: Full=ATP synthase subunit beta, mitochondrial;... 127 4e-41
AK151081_1(AK151081|pid:none) Mus musculus bone marrow macrophag... 127 4e-41
BC067388_1(BC067388|pid:none) Xenopus tropicalis ATP synthase, H... 125 5e-41
protein update 2009. 7. 5
PSORT

psg: 0.65 gvh: 0.36 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.55 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
12.0 %: cytoplasmic
8.0 %: nuclear

>> prediction for VHF777 is mit

5' end seq. ID VHF777F
5' end seq.
>VHF777F.Seq
CCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTAAAAACA
TCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTAGAGGTT
TCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAGAAAAAG
AATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAACTGAAG
TTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTGCCGTCG
TTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTGTAGATG
ATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTTTAAAGG
GTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTANNNNNNNNNN
Length of 5' end seq. 474
3' end seq. ID VHF777Z
3' end seq.
>VHF777Z.Seq
NNNNNNNNNNCTGAATTGGGTATCTATCCATGTGTCGATCCATTAGATTCAACNTCATTG
ATGATGGATCCAAATATTATTGGTGTTGAACATTACAAAGTTGCCACCGATGTACAAAAG
ATCCTCCNTAGAATATAAATCACTTCAAGATATTATTGCCATTTTAGGTATGGATGATTT
ATCTGAAGACCAAAAAGCAACTGTATTCCGTGCTCGTAAGATTCAACGTTTCTTATCACA
ACCATTCGAAGTTGCCCACGCNTTCACCAATATGGAAGGTAGATTCGTTAAACTCTCCGA
CTCTATCAAAGCCTTCAAAGGTACCCTCGAAGGTAAATACGATCATCTCCCAGAAGCTGC
CTTCTATATGGTTGGTGGTATCGAAGATGTCGAAATTAAAGCTGCTAAACTCTTAGAATC
CGCTGGTAAAGAAGAAAAGAAAACCACCACTACCTCCACCACTGGTCAAGTCAAAGAAGA
AACTGTCAGAGAAAAAGTTACCAGACTCGTCGATGAAGCTTACAATGNTAAAGTCAAGAA
ATTAAAGGAATATGGTGCCTCAACTGCTCACCTTGAAGAATTACGTGCTCAATATGAAAA
GAACTTTGAATCTGAAATCAGTCAATTAGAAGTTTTATTAAAAAAATAAATTAACTTCCA
AAACTAAAA
Length of 3' end seq. 669
Connected seq. ID VHF777P
Connected seq.
>VHF777P.Seq
CCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTAAAAACA
TCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTAGAGGTT
TCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAGAAAAAG
AATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAACTGAAG
TTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTGCCGTCG
TTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTGTAGATG
ATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTTTAAAGG
GTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTA----------CTGAAT
TGGGTATCTATCCATGTGTCGATCCATTAGATTCAACNTCATTGATGATGGATCCAAATA
TTATTGGTGTTGAACATTACAAAGTTGCCACCGATGTACAAAAGATCCTCCNTAGAATAT
AAATCACTTCAAGATATTATTGCCATTTTAGGTATGGATGATTTATCTGAAGACCAAAAA
GCAACTGTATTCCGTGCTCGTAAGATTCAACGTTTCTTATCACAACCATTCGAAGTTGCC
CACGCNTTCACCAATATGGAAGGTAGATTCGTTAAACTCTCCGACTCTATCAAAGCCTTC
AAAGGTACCCTCGAAGGTAAATACGATCATCTCCCAGAAGCTGCCTTCTATATGGTTGGT
GGTATCGAAGATGTCGAAATTAAAGCTGCTAAACTCTTAGAATCCGCTGGTAAAGAAGAA
AAGAAAACCACCACTACCTCCACCACTGGTCAAGTCAAAGAAGAAACTGTCAGAGAAAAA
GTTACCAGACTCGTCGATGAAGCTTACAATGNTAAAGTCAAGAAATTAAAGGAATATGGT
GCCTCAACTGCTCACCTTGAAGAATTACGTGCTCAATATGAAAAGAACTTTGAATCTGAA
ATCAGTCAATTAGAAGTTTTATTAAAAAAATAAATTAACTTCCAAAACTAAAA
Length of connected seq. 1123
Full length Seq ID -
Full length Seq. -
Length of full length seq. -