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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF744
Library VH
(Link to library)
Clone ID VHF744
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12456-1
Original site URL
Representative seq. ID VHF744P
(Link to Original site)
Representative DNA sequence 
>VHF744 (VHF744Q) /CSM/VH/VHF7-B/VHF744Q.Seq.d/
ACATCAATAACTTTACCAATTCAATCAAAATATAATATACGTAGATTAGCATTATCACCA
AATGGTCAAATATTAATAACATCCGATGAATCTGGTCATACATTAATTATAAATCTAACA
AGACAAGTAGTTTTANGTGAATATAAATTTTTTAAAACACCAAAATCAATATTATTTAGT
CCAAATGGAGCTATTATTGCAATTGCAGTATTAGAAAAAGTATTTTTATTTAAAACACCA
ATTATTCAAAAACAACCAAATCCATTAATTCGTTTATCAGTATTTACACATAAATCAGCA
GTAATATCAATGTGTTGGTCAGCAGATTCATTGAAATTAATGXXXXXXXXXXACTTCAAT
TTCAGTTTCTCCAACTGGTAGAGCTTGGGCTGTCTCTACAACTGAAGGTCTTTTAATTTA
TTCTTTAGATGATTTCTTATTCTTTGATCCAACTGATCTTAGTATTGATATTAATCTTGA
TTCAATTTTATCTGAGATTAAATTTAANGAAATTATTTAAAATCTTTAATTATGAGTATT
AAATTAAATGAAAAACCNATTATTGAAAAAGTATTTGAATCAATTCCATTTAATGAAATT
CAATTAGTTTGTCAAGAATTCCCAATTTATTATTTAAAGAACTTTATTCAATTCNTTAGT
GGTTATTTTGAAAAGAATCATCATTTAGAATTCCAAATGAAATGGGTTAAATTAATATCA
ATTTACCATGGAAAATATATTAAAACAAATTCATTATCAATGATTACATCTTTAAGAAAT
CTTCAAAAAACAATTACTCAAACTTATAATGATATTTCAAAAGTTTGTGACGATAATATA
TTTTCGATGGAATACTTTAAGACTGTTTTATTAAAAGAATTAAAATCTCAAGAAGAAACN
AATAAAATTTCAAAAAAGAGTCNAAAGTATAAAAAATATCTCGAATCAAAGAAAAATAAA
GAGCAAGAAGAAGATCNATTTAGTGATGACGAAGAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
TSITLPIQSKYNIRRLALSPNGQILITSDESGHTLIINLTRQVVLXEYKFFKTPKSILFS
PNGAIIAIAVLEKVFLFKTPIIQKQPNPLIRLSVFTHKSAVISMCWSADSLKLM---

---TSISVSPTGRAWAVSTTEGLLIYSLDDFLFFDPTDLSIDINLDSILSEIKFXEII*n
l*l*vln*mknxllkkylnqfhlmkfn*fvknsqfii*rtlfnslvvilkriii*nsk*n
gln*yqftmenilkqihyq*lhl*eifkkqllklimifqkfvtiiyfrwntlrlfy*kn*
nlkkkxikfqkrvxsiknisnqrkikskkkixlvmtkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TSITLPIQSKYNIRRLALSPNGQILITSDESGHTLIINLTRQVVLXEYKFFKTPKSILFS
PNGAIIAIAVLEKVFLFKTPIIQKQPNPLIRLSVFTHKSAVISMCWSADSLKLM---

---TSISVSPTGRAWAVSTTEGLLIYSLDDFLFFDPTDLSIDINLDSILSEIKFXEII*n
l*l*vln*mknxllkkylnqfhlmkfn*fvknsqfii*rtlfnslvvilkriii*nsk*n
gln*yqftmenilkqihyq*lhl*eifkkqllklimifqkfvtiiyfrwntlrlfy*kn*
nlkkkxikfqkrvxsiknisnqrkikskkkixlvmtkk

Frame B:
hq*lyqfnqniiyvd*hyhqmvky**hpmnlvih*l*i*qdk*fxvninflkhqnqyylv
qmelllqlqy*kkyfylkhqlfknnqih*fvyqylhinqq*yqcvgqqih*n*---

---lqfqflqlvelglslqlkvf*fil*misysliqlilvlililiqfylrlnlxklfki
fnyey*ik*ktxy*ksi*insi**nsislsripnllfkelysix*wlf*kessfripnem
g*ininlpwkiy*nkfiindyifkkssknnysnl**yfksl*r*yifdgil*dcfikrik
isrrnx*nfkkeskv*kisrikek*rarrrsi***rrn

Frame C:
innftnsiki*yt*isiitkwsninnir*iwsyinyksnktssfx*i*if*ntkinii*s
kwsyycncsirksifi*ntnyskttksinsfisiyt*issninvlvsrfiein---

---fnfsfsnw*slgclyn*rsfnlffr*flil*sn*s*y*y*s*fnfi*d*i*xnylks
limsiklnekpiiekvfesipfneiqlvcqefpiyylknfiqfxsgyfeknhhlefqmkw
vklisiyhgkyiktnslsmitslrnlqktitqtyndiskvcddnifsmeyfktvllkelk
sqeetnkiskksxkykkyleskknkeqeedxfsddee
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF744 (VHF744Q) /CSM/VH/VHF7-B/VHF744Q.Seq.d/                       1699   0.0
VHP438 (VHP438Q) /CSM/VH/VHP4-B/VHP438Q.Seq.d/                       1027   0.0
VHK863 (VHK863Q) /CSM/VH/VHK8-C/VHK863Q.Seq.d/                        672   0.0
VSE524 (VSE524Q) /CSM/VS/VSE5-A/VSE524Q.Seq.d/                         40   0.064
VSC780 (VSC780Q) /CSM/VS/VSC7-D/VSC780Q.Seq.d/                         40   0.064
VSA642 (VSA642Q) /CSM/VS/VSA6-B/VSA642Q.Seq.d/                         40   0.064
SSM512 (SSM512Q) /CSM/SS/SSM5-A/SSM512Q.Seq.d/                         40   0.064
SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/                         40   0.064
SSK341 (SSK341Q) /CSM/SS/SSK3-B/SSK341Q.Seq.d/                         40   0.064
SSJ316 (SSJ316Q) /CSM/SS/SSJ3-A/SSJ316Q.Seq.d/                         40   0.064
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440006) Dictyostelium discoideum cDNA clone:ddv42h11, 3' ...   581   0.0    3
(BJ446025) Dictyostelium discoideum cDNA clone:ddv61l10, 3' ...   581   0.0    3
(BJ427139) Dictyostelium discoideum cDNA clone:ddv61l10, 5' ...   670   0.0    1
(BJ424511) Dictyostelium discoideum cDNA clone:ddv52n16, 5' ...   670   0.0    1
(BJ421355) Dictyostelium discoideum cDNA clone:ddv42h11, 5' ...   670   0.0    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   1e-04  12
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    40   0.001  17
(AX344560) Sequence 11 from Patent WO0200932.                      42   0.026  9
(AC183429) Populus trichocarpa clone Pop1-49O2, complete seq...    40   0.032  7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   0.042  16
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017347_451(AE017347|pid:none) Cryptococcus neoformans var. neo...    93   6e-23
(Q9C1X1) RecName: Full=Periodic tryptophan protein 2 homolog;  &...    97   5e-22
BC013309_1(BC013309|pid:none) Homo sapiens PWP2 periodic tryptop...    86   1e-21
BC047817_1(BC047817|pid:none) Danio rerio PWP2 periodic tryptoph...    84   2e-21
(Q5RFQ3) RecName: Full=Periodic tryptophan protein 2 homolog;  &...    86   3e-21
CR382123_385(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    90   3e-21
(Q8BU03) RecName: Full=Periodic tryptophan protein 2 homolog;  &...    87   5e-21
AK088983_1(AK088983|pid:none) Mus musculus 2 days neonate thymus...    87   5e-21
AB041855_1(AB041855|pid:none) Mus musculus wdp103 mRNA for WD-re...    87   5e-21
BC031787_1(BC031787|pid:none) Mus musculus PWP2 (periodic trypto...    87   5e-21
protein update 2009. 7. 5
PSORT 

 psg: 0.55  gvh: 0.43  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHF744 is nuc
5' end seq. ID VHF744F
5' end seq. 
>VHF744F.Seq
ACATCAATAACTTTACCAATTCAATCAAAATATAATATACGTAGATTAGCATTATCACCA
AATGGTCAAATATTAATAACATCCGATGAATCTGGTCATACATTAATTATAAATCTAACA
AGACAAGTAGTTTTANGTGAATATAAATTTTTTAAAACACCAAAATCAATATTATTTAGT
CCAAATGGAGCTATTATTGCAATTGCAGTATTAGAAAAAGTATTTTTATTTAAAACACCA
ATTATTCAAAAACAACCAAATCCATTAATTCGTTTATCAGTATTTACACATAAATCAGCA
GTAATATCAATGTGTTGGTCAGCAGATTCATTGAAATTAATGNNNNNNNNNN
Length of 5' end seq. 352
3' end seq. ID VHF744Z
3' end seq. 
>VHF744Z.Seq
NNNNNNNNNNACTTCAATTTCAGTTTCTCCAACTGGTAGAGCTTGGGCTGTCTCTACAAC
TGAAGGTCTTTTAATTTATTCTTTAGATGATTTCTTATTCTTTGATCCAACTGATCTTAG
TATTGATATTAATCTTGATTCAATTTTATCTGAGATTAAATTTAANGAAATTATTTAAAA
TCTTTAATTATGAGTATTAAATTAAATGAAAAACCNATTATTGAAAAAGTATTTGAATCA
ATTCCATTTAATGAAATTCAATTAGTTTGTCAAGAATTCCCAATTTATTATTTAAAGAAC
TTTATTCAATTCNTTAGTGGTTATTTTGAAAAGAATCATCATTTAGAATTCCAAATGAAA
TGGGTTAAATTAATATCAATTTACCATGGAAAATATATTAAAACAAATTCATTATCAATG
ATTACATCTTTAAGAAATCTTCAAAAAACAATTACTCAAACTTATAATGATATTTCAAAA
GTTTGTGACGATAATATATTTTCGATGGAATACTTTAAGACTGTTTTATTAAAAGAATTA
AAATCTCAAGAAGAAACNAATAAAATTTCAAAAAAGAGTCNAAAGTATAAAAAATATCTC
GAATCAAAGAAAAATAAAGAGCAAGAAGAAGATCNATTTAGTGATGACGAAGAAAC
Length of 3' end seq. 656
Connected seq. ID VHF744P
Connected seq. 
>VHF744P.Seq
ACATCAATAACTTTACCAATTCAATCAAAATATAATATACGTAGATTAGCATTATCACCA
AATGGTCAAATATTAATAACATCCGATGAATCTGGTCATACATTAATTATAAATCTAACA
AGACAAGTAGTTTTANGTGAATATAAATTTTTTAAAACACCAAAATCAATATTATTTAGT
CCAAATGGAGCTATTATTGCAATTGCAGTATTAGAAAAAGTATTTTTATTTAAAACACCA
ATTATTCAAAAACAACCAAATCCATTAATTCGTTTATCAGTATTTACACATAAATCAGCA
GTAATATCAATGTGTTGGTCAGCAGATTCATTGAAATTAATG----------ACTTCAAT
TTCAGTTTCTCCAACTGGTAGAGCTTGGGCTGTCTCTACAACTGAAGGTCTTTTAATTTA
TTCTTTAGATGATTTCTTATTCTTTGATCCAACTGATCTTAGTATTGATATTAATCTTGA
TTCAATTTTATCTGAGATTAAATTTAANGAAATTATTTAAAATCTTTAATTATGAGTATT
AAATTAAATGAAAAACCNATTATTGAAAAAGTATTTGAATCAATTCCATTTAATGAAATT
CAATTAGTTTGTCAAGAATTCCCAATTTATTATTTAAAGAACTTTATTCAATTCNTTAGT
GGTTATTTTGAAAAGAATCATCATTTAGAATTCCAAATGAAATGGGTTAAATTAATATCA
ATTTACCATGGAAAATATATTAAAACAAATTCATTATCAATGATTACATCTTTAAGAAAT
CTTCAAAAAACAATTACTCAAACTTATAATGATATTTCAAAAGTTTGTGACGATAATATA
TTTTCGATGGAATACTTTAAGACTGTTTTATTAAAAGAATTAAAATCTCAAGAAGAAACN
AATAAAATTTCAAAAAAGAGTCNAAAGTATAAAAAATATCTCGAATCAAAGAAAAATAAA
GAGCAAGAAGAAGATCNATTTAGTGATGACGAAGAAAC
Length of connected seq. 988
Full length Seq ID -
Full length Seq. -
Length of full length seq. -