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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF737
Library VH
(Link to library)
Clone ID VHF737
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11426-1
Original site URL
Representative seq. ID VHF737P
(Link to Original site)
Representative DNA sequence 
>VHF737 (VHF737Q) /CSM/VH/VHF7-B/VHF737Q.Seq.d/
AAAATCGATNGTCATTACTATCAACCANGTTCAAATTTATNGGCGATCGTAAGTGAATTA
GANAATTTCCCAGAAACTAAACATACCTTGGTATCANGTGATGCAACCTCTCCAACTTTT
ACAAAAACATTCAAACTTCAACAAAACAATCGTGAAATTTCATTGGATATTGAACGTACC
GAATTGATTAAAGGCGTTCGTACTCTATCATTTTATTGTCAATATTGGTTAGTCAATAAT
TCCCTCTTACCAATTGAAGTCAAGTTATCCGATAATCAAGTACTATTGGTACCACCCAAT
TTACCAGATCAATTACCACGACCACCAGTGCTCTATAGTAACAACACAATTCGTGCTCGT
ATTCCATTACAAGCTGAACAACCAATGAATAAGAGTTTCTGTGAGAAATTCCCAATCTCT
GCAGTTGGTAATCCAAATACTATCTTTTTAACAAACCCAACTCGTACTTATGAACTCTCA
TACAAAGTTGATTTCTGTCCAAATGAAAGATTCCGTCTCTCTAAAACXXXXXXXXXXGAA
GGTATTAAAAACNCTACAAATCTTCAAAGTCAAGCAGAACGTGTTCGTCCTCCAAGATGC
TTTTCTCATGATAACGTTTTACGTCCATTCGATGAAGTTGAAAGTGAAGGTTGGTTCCTT
TTGAAAACCGCTCACAAAGGTAAACATGCTTCTGATAGTTACATTTGGCATCATATCATC
AATCAAGAATGTACCATCATCATNTCTGATCATAGAATTATCTTATCAAAATCTAAAAAG
AATTTCTTACATAGTTCTTTCATCTTCCAAATTCCTTTCAAATTCATTAAATCAAATGAA
ATGGTAGATGATGGTGTTCTTTTAGAATTTGACCCACNTCAAAATCTTGGTTTATTAGAT
CGCGATGTTAAATNTAAAGTAATTCCAGTCGAGGATCTTAAGTGTAAACATGTTATTAAA
TATGAAATTATCTCANGACTTTGAAAAAATTCCANGATAATAATCCAAATTTATCAAATT
CTTCCTCTATTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KIDXHYYQPXSNLXAIVSELXNFPETKHTLVSXDATSPTFTKTFKLQQNNREISLDIERT
ELIKGVRTLSFYCQYWLVNNSLLPIEVKLSDNQVLLVPPNLPDQLPRPPVLYSNNTIRAR
IPLQAEQPMNKSFCEKFPISAVGNPNTIFLTNPTRTYELSYKVDFCPNERFRLSK---

---EGIKNXTNLQSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIW
HHIINQECTIIXSDHRIILSKSKKNFLHSSFIFQIPFKFIKSNEMVDDGVLLEFDPXQNL
GLLDRDVKXKVIPVEDLKCKHVIKYEIISXL*knsxiiiqiyqilpll
Translated Amino Acid sequence (All Frames) 
Frame A:
KIDXHYYQPXSNLXAIVSELXNFPETKHTLVSXDATSPTFTKTFKLQQNNREISLDIERT
ELIKGVRTLSFYCQYWLVNNSLLPIEVKLSDNQVLLVPPNLPDQLPRPPVLYSNNTIRAR
IPLQAEQPMNKSFCEKFPISAVGNPNTIFLTNPTRTYELSYKVDFCPNERFRLSK---

---EGIKNXTNLQSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIW
HHIINQECTIIXSDHRIILSKSKKNFLHSSFIFQIPFKFIKSNEMVDDGVLLEFDPXQNL
GLLDRDVKXKVIPVEDLKCKHVIKYEIISXL*knsxiiiqiyqilpll

Frame B:
ksxvitinxvqiyxrs*vn*xisqklnipwyxvmqplqllqkhsnfnktivkfhwilnvp
n*lkafvlyhfivnig*siipsyqlkssypiikyywyhpiyqinyhdhqcsivttqfvlv
fhyklnnq*irvsvrnsqslqlviqilsf*qtqlvlmnshtklisvqmkdsvslk---

---kvlktlqifkvkqnvfvlqdaflmitfyvhsmklkvkvgsf*kpltkvnmllivtfg
iissiknvpssxliielsyqnlkrisyivlssskflsnslnqmkw*mmvff*nlthxkil
vy*iamlnxk*fqsrilsvnmllnmklsxdfekipx**skfikffly*

Frame C:
nrxsllstxfkfxgdrk*irxfprn*tylgix*cnlsnfykniqtstkqs*nfigy*tyr
id*rrsysiillsilvsq*fpltn*sqvir*sstigttqftrsittttsal**qhnscsy
sits*ttne*efl*eipnlcsw*skyylfnkpnsyl*tliqs*flsk*kipsl*n---

---ry*kxyksskssrtcssskmlfs**rftsir*s*k*rlvpfenrsqr*tcf**lhla
syhqsrmyhhhx*s*nyliki*keflt*ffhlpnsfqih*ik*ngr*wcsfri*ptsksw
firsrc*x*snssrgs*v*tcy*i*nylxtlkkfxdnnpnlsnsssik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF737 (VHF737Q) /CSM/VH/VHF7-B/VHF737Q.Seq.d/                       1925   0.0
SHA536 (SHA536Q) /CSM/SH/SHA5-B/SHA536Q.Seq.d/                       1007   0.0
VSJ191 (VSJ191Q) /CSM/VS/VSJ1-D/VSJ191Q.Seq.d/                        890   0.0
VHF479 (VHF479Q) /CSM/VH/VHF4-D/VHF479Q.Seq.d/                        890   0.0
SHF567 (SHF567Q) /CSM/SH/SHF5-C/SHF567Q.Seq.d/                        880   0.0
VHP758 (VHP758Q) /CSM/VH/VHP7-C/VHP758Q.Seq.d/                        874   0.0
CHS386 (CHS386Q) /CSM/CH/CHS3-D/CHS386Q.Seq.d/                        874   0.0
SHG388 (SHG388Q) /CSM/SH/SHG3-D/SHG388Q.Seq.d/                        864   0.0
AHP137 (AHP137Q) /CSM/AH/AHP1-B/AHP137Q.Seq.d/                        864   0.0
AFG252 (AFG252Q) /CSM/AF/AFG2-C/AFG252Q.Seq.d/                        862   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421361) Dictyostelium discoideum cDNA clone:ddv42j09, 5' ...  1015   0.0    1
(BJ391824) Dictyostelium discoideum cDNA clone:dds25g09, 5' ...  1007   0.0    1
(BJ440014) Dictyostelium discoideum cDNA clone:ddv42j09, 3' ...   948   0.0    1
(BJ439877) Dictyostelium discoideum cDNA clone:ddv41n20, 3' ...   761   0.0    3
(AU269550) Dictyostelium discoideum vegetative cDNA clone:VS...   751   0.0    3
(BJ406519) Dictyostelium discoideum cDNA clone:dds35e17, 3' ...   761   0.0    4
(BJ386636) Dictyostelium discoideum cDNA clone:ddc58l21, 3' ...   751   0.0    3
(BJ446378) Dictyostelium discoideum cDNA clone:ddv62d15, 3' ...   751   0.0    3
(BJ406942) Dictyostelium discoideum cDNA clone:dds36p21, 3' ...   751   0.0    4
(BJ403500) Dictyostelium discoideum cDNA clone:dds25g09, 3' ...   751   0.0    4
dna update 2008.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LB8) RecName: Full=Putative vacuolar protein sorting-associa...   316   7e-85
(Q54LN2) RecName: Full=Putative vacuolar protein sorting-associa...    80   2e-13
CR382125_24(CR382125|pid:none) Kluyveromyces lactis strain NRRL ...    58   5e-07
AE017343_227(AE017343|pid:none) Cryptococcus neoformans var. neo...    57   1e-06
AP007155_926(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    51   6e-05
FN357331_29(FN357331|pid:none) Schistosoma mansoni genome sequen...    50   1e-04
AM270077_11(AM270077|pid:none) Aspergillus niger contig An04c016...    50   1e-04
CR380949_126(CR380949|pid:none) Candida glabrata strain CBS138 c...    49   2e-04
(Q07878) RecName: Full=Vacuolar protein sorting-associated prote...    49   4e-04
AM920437_609(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    48   5e-04
protein update 2009. 7. 5
PSORT 

 psg: 0.82  gvh: 0.44  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHF737 is cyt
5' end seq. ID VHF737F
5' end seq. 
>VHF737F.Seq
AAAATCGATNGTCATTACTATCAACCANGTTCAAATTTATNGGCGATCGTAAGTGAATTA
GANAATTTCCCAGAAACTAAACATACCTTGGTATCANGTGATGCAACCTCTCCAACTTTT
ACAAAAACATTCAAACTTCAACAAAACAATCGTGAAATTTCATTGGATATTGAACGTACC
GAATTGATTAAAGGCGTTCGTACTCTATCATTTTATTGTCAATATTGGTTAGTCAATAAT
TCCCTCTTACCAATTGAAGTCAAGTTATCCGATAATCAAGTACTATTGGTACCACCCAAT
TTACCAGATCAATTACCACGACCACCAGTGCTCTATAGTAACAACACAATTCGTGCTCGT
ATTCCATTACAAGCTGAACAACCAATGAATAAGAGTTTCTGTGAGAAATTCCCAATCTCT
GCAGTTGGTAATCCAAATACTATCTTTTTAACAAACCCAACTCGTACTTATGAACTCTCA
TACAAAGTTGATTTCTGTCCAAATGAAAGATTCCGTCTCTCTAAAACNNNNNNNNNN
Length of 5' end seq. 537
3' end seq. ID VHF737Z
3' end seq. 
>VHF737Z.Seq
NNNNNNNNNNGAAGGTATTAAAAACNCTACAAATCTTCAAAGTCAAGCAGAACGTGTTCG
TCCTCCAAGATGCTTTTCTCATGATAACGTTTTACGTCCATTCGATGAAGTTGAAAGTGA
AGGTTGGTTCCTTTTGAAAACCGCTCACAAAGGTAAACATGCTTCTGATAGTTACATTTG
GCATCATATCATCAATCAAGAATGTACCATCATCATNTCTGATCATAGAATTATCTTATC
AAAATCTAAAAAGAATTTCTTACATAGTTCTTTCATCTTCCAAATTCCTTTCAAATTCAT
TAAATCAAATGAAATGGTAGATGATGGTGTTCTTTTAGAATTTGACCCACNTCAAAATCT
TGGTTTATTAGATCGCGATGTTAAATNTAAAGTAATTCCAGTCGAGGATCTTAAGTGTAA
ACATGTTATTAAATATGAAATTATCTCANGACTTTGAAAAAATTCCANGATAATAATCCA
AATTTATCAAATTCTTCCTCTATTAAA
Length of 3' end seq. 507
Connected seq. ID VHF737P
Connected seq. 
>VHF737P.Seq
AAAATCGATNGTCATTACTATCAACCANGTTCAAATTTATNGGCGATCGTAAGTGAATTA
GANAATTTCCCAGAAACTAAACATACCTTGGTATCANGTGATGCAACCTCTCCAACTTTT
ACAAAAACATTCAAACTTCAACAAAACAATCGTGAAATTTCATTGGATATTGAACGTACC
GAATTGATTAAAGGCGTTCGTACTCTATCATTTTATTGTCAATATTGGTTAGTCAATAAT
TCCCTCTTACCAATTGAAGTCAAGTTATCCGATAATCAAGTACTATTGGTACCACCCAAT
TTACCAGATCAATTACCACGACCACCAGTGCTCTATAGTAACAACACAATTCGTGCTCGT
ATTCCATTACAAGCTGAACAACCAATGAATAAGAGTTTCTGTGAGAAATTCCCAATCTCT
GCAGTTGGTAATCCAAATACTATCTTTTTAACAAACCCAACTCGTACTTATGAACTCTCA
TACAAAGTTGATTTCTGTCCAAATGAAAGATTCCGTCTCTCTAAAAC----------GAA
GGTATTAAAAACNCTACAAATCTTCAAAGTCAAGCAGAACGTGTTCGTCCTCCAAGATGC
TTTTCTCATGATAACGTTTTACGTCCATTCGATGAAGTTGAAAGTGAAGGTTGGTTCCTT
TTGAAAACCGCTCACAAAGGTAAACATGCTTCTGATAGTTACATTTGGCATCATATCATC
AATCAAGAATGTACCATCATCATNTCTGATCATAGAATTATCTTATCAAAATCTAAAAAG
AATTTCTTACATAGTTCTTTCATCTTCCAAATTCCTTTCAAATTCATTAAATCAAATGAA
ATGGTAGATGATGGTGTTCTTTTAGAATTTGACCCACNTCAAAATCTTGGTTTATTAGAT
CGCGATGTTAAATNTAAAGTAATTCCAGTCGAGGATCTTAAGTGTAAACATGTTATTAAA
TATGAAATTATCTCANGACTTTGAAAAAATTCCANGATAATAATCCAAATTTATCAAATT
CTTCCTCTATTAAA
Length of connected seq. 1024
Full length Seq ID -
Full length Seq. -
Length of full length seq. -