>VHF729 (VHF729Q) /CSM/VH/VHF7-B/VHF729Q.Seq.d/
XXXXXXXXXXCCNACACCAAGTNAATCNATTGATGAATCCGATGTATTCGCTTTTNATAC
TAAATTTAANNGTAAATTATTCCGTGTTAAAGTTAAGNCAGTNGTTNAAAA

---XHQVNXLMNPMYSLXILNLXVNYSVLKLXQXXK

Frame A:
---XHQVNXLMNPMYSLXILNLXVNYSVLKLXQXXK


Frame B:
---xtkxix**ircirfxy*i*x*iipc*s*xsxxk


Frame C:
---tpsxsidesdvfafxtkfxxklfrvkvkxvvx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF729 (VHF729Q) /CSM/VH/VHF7-B/VHF729Q.Seq.d/                        147   4e-35
VSK353 (VSK353Q) /CSM/VS/VSK3-C/VSK353Q.Seq.d/                        139   9e-33
VHQ327 (VHQ327Q) /CSM/VH/VHQ3-B/VHQ327Q.Seq.d/                        139   9e-33
VHH207 (VHH207Q) /CSM/VH/VHH2-A/VHH207Q.Seq.d/                        139   9e-33
VHG389 (VHG389Q) /CSM/VH/VHG3-D/VHG389Q.Seq.d/                        139   9e-33
VHB307 (VHB307Q) /CSM/VH/VHB3-A/VHB307Q.Seq.d/                        139   9e-33
SSI609 (SSI609Q) /CSM/SS/SSI6-A/SSI609Q.Seq.d/                        139   9e-33
SSC509 (SSC509Q) /CSM/SS/SSC5-A/SSC509Q.Seq.d/                        139   9e-33
CHQ457 (CHQ457Q) /CSM/CH/CHQ4-C/CHQ457Q.Seq.d/                        139   9e-33
CHC421 (CHC421Q) /CSM/CH/CHC4-A/CHC421Q.Seq.d/                        139   9e-33

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440012) Dictyostelium discoideum cDNA clone:ddv42j07, 3' ...   147   8e-32  1
(AU271053) Dictyostelium discoideum vegetative cDNA clone:VS...   139   2e-29  1
(AU271052) Dictyostelium discoideum vegetative cDNA clone:VS...   139   2e-29  1
(C90277) Dictyostelium discoideum slug cDNA, clone SSI609.        139   2e-29  1
(C84036) Dictyostelium discoideum slug cDNA, clone SSC509.        139   2e-29  1
(BJ446621) Dictyostelium discoideum cDNA clone:ddv63f07, 3' ...   139   2e-29  1
(BJ440933) Dictyostelium discoideum cDNA clone:ddv45m02, 3' ...   139   2e-29  1
(BJ440456) Dictyostelium discoideum cDNA clone:ddv43b23, 3' ...   139   2e-29  1
(BJ437094) Dictyostelium discoideum cDNA clone:ddv33n01, 3' ...   139   2e-29  1
(BJ385303) Dictyostelium discoideum cDNA clone:ddc54b16, 3' ...   139   2e-29  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NZ5) RecName: Full=Cullin-3;          Short=CUL-3; AltName: ...    33   2.4

 psg: 0.88  gvh: 0.40  alm: 0.45  top: 0.57  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VHF729 is mit

>VHF729Z.Seq
NNNNNNNNNNCCNACACCAAGTNAATCNATTGATGAATCCGATGTATTCGCTTTTNATAC
TAAATTTAANNGTAAATTATTCCGTGTTAAAGTTAAGNCAGTNGTTNAAAA