NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF709
Library VH
(Link to library)
Clone ID VHF709
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF709 (VHF709Q) /CSM/VH/VHF7-A/VHF709Q.Seq.d/
XXXXXXXXXXCGTCCAAGAATTTTACCACCAGATCTCGTCTACAGTTGTGCTGCAGTTTT
AATGGCTTATNTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTATCATGGGTAA
TGTAAATCCATCTGGTCGTCTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTGT
TCCATATTACCACAAATACAGTGAAAATGGTGTCACCACTCCAATCTTCCAATTTGGTGA
TGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTAAACCAAT
NTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCAC
TGTCACAAACAATGGTAACGTTCAAGGTAAAGANTCTGTTATCTTATATNTNTCTGATCT
TTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTAT
GCCAGATAAATCTCAACAAATCTCTTTTACCNTCAAGGCCTATGAATTCTCCTTTATTGG
TGTCGATAATAAAATTACTTTAGAATCGGTCAATTCATCATTAGGTGGAATCAACAATTA
GG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---PRILPPDLVYSCAAVLMAYXPGSEGGKPIANIIMGNVNPSGRLPLTYPGTTGDIGVP
YYHKYSENGVTTPIFQFGDGLSYTTFNYTNLACSNCKPXSGQSGNYTGVLGQSYTFTVTV
TNNGNVQGKXSVILYXSDLWAQVTPEVKMLRGFQKVDLMPDKSQQISFTXKAYEFSFIGV
DNKITLESVNSSLGGINN*
Translated Amino Acid sequence (All Frames) 
Frame A:
---vqefyhqisstvvlqf*wlxsqvvkvvnqsptlswvm*ihlvvfl*liqvllvisvf
hittntvkmvsplqssnlvmvfliplltipispvaivnqxlvnlvttlvf*vnpilslsl
sqtmvtfkvkxllsyxxlifglkllqklkc*evskklilcqinlnksllpsrpmnspllv
siikll*nrsihh*vestir


Frame B:
---sknfttrsrlqlccsfnglxpr**rw*tnrqhyhg*cksiwsssfnlsryyw*yrcs
ilpqiq*kwchhsnlpiw*wsflyhf*lyqsrl*ql*tnxwsiw*lhwcfrsilyfhchc
hkqw*rsr*rxcylixx*slgssysrs*nvkrfpks*syar*istnlfyxqgl*illywc
r**nyfrigqfiirwnqql


Frame C:
---PRILPPDLVYSCAAVLMAYXPGSEGGKPIANIIMGNVNPSGRLPLTYPGTTGDIGVP
YYHKYSENGVTTPIFQFGDGLSYTTFNYTNLACSNCKPXSGQSGNYTGVLGQSYTFTVTV
TNNGNVQGKXSVILYXSDLWAQVTPEVKMLRGFQKVDLMPDKSQQISFTXKAYEFSFIGV
DNKITLESVNSSLGGINN*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF709 (VHF709Q) /CSM/VH/VHF7-A/VHF709Q.Seq.d/                       1138   0.0
VHE702 (VHE702Q) /CSM/VH/VHE7-A/VHE702Q.Seq.d/                       1110   0.0
VHE533 (VHE533Q) /CSM/VH/VHE5-B/VHE533Q.Seq.d/                       1104   0.0
VHN466 (VHN466Q) /CSM/VH/VHN4-C/VHN466Q.Seq.d/                       1098   0.0
VHJ810 (VHJ810Q) /CSM/VH/VHJ8-A/VHJ810Q.Seq.d/                       1098   0.0
VHD249 (VHD249Q) /CSM/VH/VHD2-C/VHD249Q.Seq.d/                       1098   0.0
VHA656 (VHA656Q) /CSM/VH/VHA6-C/VHA656Q.Seq.d/                       1098   0.0
VHA640 (VHA640Q) /CSM/VH/VHA6-B/VHA640Q.Seq.d/                       1098   0.0
VHA467 (VHA467Q) /CSM/VH/VHA4-C/VHA467Q.Seq.d/                       1098   0.0
VHQ129 (VHQ129Q) /CSM/VH/VHQ1-B/VHQ129Q.Seq.d/                       1096   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439898) Dictyostelium discoideum cDNA clone:ddv42b03, 3' ...  1138   0.0    1
(BJ444816) Dictyostelium discoideum cDNA clone:ddv57d18, 3' ...  1098   0.0    1
(BJ442488) Dictyostelium discoideum cDNA clone:ddv50d04, 3' ...  1098   0.0    1
(BJ438292) Dictyostelium discoideum cDNA clone:ddv37a14, 3' ...  1098   0.0    1
(BJ436938) Dictyostelium discoideum cDNA clone:ddv32o14, 3' ...  1098   0.0    1
(BJ436857) Dictyostelium discoideum cDNA clone:ddv32o10, 3' ...  1098   0.0    1
(BJ436571) Dictyostelium discoideum cDNA clone:ddv31f18, 3' ...  1098   0.0    1
(BJ446635) Dictyostelium discoideum cDNA clone:ddv63i07, 3' ...  1096   0.0    1
(BJ446488) Dictyostelium discoideum cDNA clone:ddv62k19, 3' ...  1096   0.0    1
(BJ438957) Dictyostelium discoideum cDNA clone:ddv39c01, 3' ...  1096   0.0    1
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma...   337   1e-91
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   115   1e-24
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   108   9e-23
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ...   107   3e-22
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   105   1e-21
CP000388_3699(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    99   9e-20
CP001146_680(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    97   3e-19
CP000685_3497(CP000685|pid:none) Flavobacterium johnsoniae UW101...    96   1e-18
CP000383_2243(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    95   1e-18
CP001251_792(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    95   2e-18
protein update 2009. 7. 4
PSORT 

 psg: 0.92  gvh: 0.59  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: cytoplasmic
	 20.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for VHF709 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF709Z
3' end seq. 
>VHF709Z.Seq
NNNNNNNNNNCGTCCAAGAATTTTACCACCAGATCTCGTCTACAGTTGTGCTGCAGTTTT
AATGGCTTATNTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTATCATGGGTAA
TGTAAATCCATCTGGTCGTCTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTGT
TCCATATTACCACAAATACAGTGAAAATGGTGTCACCACTCCAATCTTCCAATTTGGTGA
TGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTAAACCAAT
NTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCAC
TGTCACAAACAATGGTAACGTTCAAGGTAAAGANTCTGTTATCTTATATNTNTCTGATCT
TTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTAT
GCCAGATAAATCTCAACAAATCTCTTTTACCNTCAAGGCCTATGAATTCTCCTTTATTGG
TGTCGATAATAAAATTACTTTAGAATCGGTCAATTCATCATTAGGTGGAATCAACAATTA
GG
Length of 3' end seq. 602
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -