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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF690
Library VH
(Link to library)
Clone ID VHF690
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11064-1
Original site URL
Representative seq. ID VHF690P
(Link to Original site)
Representative DNA sequence 
>VHF690 (VHF690Q) /CSM/VH/VHF6-D/VHF690Q.Seq.d/
AGCACCTCCAATAAAATCAATTACTTCAATCGATAATGATGATAACGTTGATGGTGTTAT
TGAAAAGTCAGTCAAAAAACCAGTATCTTTAACATTTGATCAAATCATTGATAGATTTTA
TAAACATATTTTAACATGGGATGCATCAGATTTATCACCAAAGGAAAAAGAATTAAAACC
AGTAAAAGTXXXXXXXXXXACCGTAGATGGTTTCCAAGGTAGAGAGAGAGAAATCATCAT
TTTCAGTTGTGTTAGAGCACCAGTTGAAGAGGGTGCAGGTATTGGTTTTCTTTCAGATGT
TCGTCGTATGAATGTAGCTTTAACACGTCCAAGATCATNTCTATTGATCNTTGGTAATAC
TAAAGCATTAAGTATCAACAAAGATTGGAATGAATTAATTCAACATACTCAAAACAATCA
ACAATTAATTCNTGTTACCAAAGATCAACCATTAGAAATTATCATACCAACTTTTACAAA
TCGTGAATTATTTACCGAACTCTATGAAAAAGGTCAACAAATTGTAATTCCAAAACCAAG
AACTGAAGAAGAAATTAATCTTCAAAAACAAAAAGATATTGAAAAAAGAAAGAAACTACA
TAAAAGAC
sequence update 2002.10.25
Translated Amino Acid sequence 
APPIKSITSIDNDDNVDGVIEKSVKKPVSLTFDQIIDRFYKHILTWDASDLSPKEKELKP
VK---

---TVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSXLLIXGNTKAL
SINKDWNELIQHTQNNQQLIXVTKDQPLEIIIPTFTNRELFTELYEKGQQIVIPKPRTEE
EINLQKQKDIEKRKKLHKR
Translated Amino Acid sequence (All Frames) 
Frame A:
stsnkinyfnr****r*wcy*kvsqktsifni*snh**il*tyfnmgcirfitkgkrikt
sks---

---TVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSXLLIXGNTKAL
SINKDWNELIQHTQNNQQLIXVTKDQPLEIIIPTFTNRELFTELYEKGQQIVIPKPRTEE
EINLQKQKDIEKRKKLHKR

Frame B:
APPIKSITSIDNDDNVDGVIEKSVKKPVSLTFDQIIDRFYKHILTWDASDLSPKEKELKP
VK---

---p*mvskverekssfsvvlehqlkrvqvlvffqmfvv*m*l*hvqdhxy*slvilkh*
vstkigmn*fnilktinn*fxlpkinh*klsyqllqivnylpnsmkkvnkl*fqnqelkk
klifknkkilkkernyikd

Frame C:
hlq*nqllqsimmitlmvllksqsknqyl*hlikslidfinif*hgmhqiyhqrkkn*nq
*k---

---rrwfpr*rernhhfqlc*sts*rgcrywfsfrcssyecsfntskixsidxw*y*sik
yqqrle*instyskqstinscyqrstirnyhtnfyks*iiyrtl*krstncnsktkn*rr
n*ssktkry*kkkett*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF690 (VHF690Q) /CSM/VH/VHF6-D/VHF690Q.Seq.d/                       1001   0.0
SHF165 (SHF165Q) /CSM/SH/SHF1-C/SHF165Q.Seq.d/                        652   0.0
VHK557 (VHK557Q) /CSM/VH/VHK5-C/VHK557Q.Seq.d/                        650   0.0
VHJ181 (VHJ181Q) /CSM/VH/VHJ1-D/VHJ181Q.Seq.d/                        650   0.0
VHH679 (VHH679Q) /CSM/VH/VHH6-D/VHH679Q.Seq.d/                        650   0.0
VHH108 (VHH108Q) /CSM/VH/VHH1-A/VHH108Q.Seq.d/                        650   0.0
VHG831 (VHG831Q) /CSM/VH/VHG8-B/VHG831Q.Seq.d/                        650   0.0
VHC442 (VHC442Q) /CSM/VH/VHC4-B/VHC442Q.Seq.d/                        650   0.0
VHA562 (VHA562Q) /CSM/VH/VHA5-C/VHA562Q.Seq.d/                        650   0.0
SHL356 (SHL356Q) /CSM/SH/SHL3-C/SHL356Q.Seq.d/                        650   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   622   0.0    3
(BJ440145) Dictyostelium discoideum cDNA clone:ddv42c24, 3' ...   638   e-179  1
(BJ406201) Dictyostelium discoideum cDNA clone:dds34a17, 3' ...   624   e-175  1
(BJ443287) Dictyostelium discoideum cDNA clone:ddv52a15, 3' ...   622   e-174  1
(BJ442547) Dictyostelium discoideum cDNA clone:ddv50a10, 3' ...   622   e-174  1
(BJ442480) Dictyostelium discoideum cDNA clone:ddv50b06, 3' ...   622   e-174  1
(BJ442392) Dictyostelium discoideum cDNA clone:ddv49a21, 3' ...   622   e-174  1
(BJ441977) Dictyostelium discoideum cDNA clone:ddv48n12, 3' ...   622   e-174  1
(BJ441505) Dictyostelium discoideum cDNA clone:ddv46m20, 3' ...   622   e-174  1
(BJ440943) Dictyostelium discoideum cDNA clone:ddv45o01, 3' ...   622   e-174  1
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86AS0) RecName: Full=Probable helicase DDB_G0274399;          ...   256   3e-67
EU382072_3(EU382072|pid:none) Arabidopsis halleri subsp. halleri...    87   4e-16
CR382134_383(CR382134|pid:none) Debaryomyces hansenii strain CBS...    84   2e-15
AP005852_20(AP005852|pid:none) Oryza sativa Japonica Group genom...    84   3e-15
AL731628_17(AL731628|pid:none) Oryza sativa genomic DNA, chromos...    84   3e-15
EU382073_10(EU382073|pid:none) Arabidopsis halleri subsp. haller...    83   5e-15
FN392320_629(FN392320|pid:none) Pichia pastoris GS115 chromosome...    82   9e-15
AC002392_13(AC002392|pid:none) Arabidopsis thaliana chromosome 2...    82   2e-14
AP008209_1815(AP008209|pid:none) Oryza sativa (japonica cultivar...    81   3e-14
AC097367_10(AC097367|pid:none) Oryza sativa chromosome 3 BAC OSJ...    81   3e-14
protein update 2009. 7. 4
PSORT 

 psg: 0.43  gvh: 0.30  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHF690 is cyt
5' end seq. ID VHF690F
5' end seq. 
>VHF690F.Seq
AGCACCTCCAATAAAATCAATTACTTCAATCGATAATGATGATAACGTTGATGGTGTTAT
TGAAAAGTCAGTCAAAAAACCAGTATCTTTAACATTTGATCAAATCATTGATAGATTTTA
TAAACATATTTTAACATGGGATGCATCAGATTTATCACCAAAGGAAAAAGAATTAAAACC
AGTAAAAGTNNNNNNNNNN
Length of 5' end seq. 199
3' end seq. ID VHF690Z
3' end seq. 
>VHF690Z.Seq
NNNNNNNNNNACCGTAGATGGTTTCCAAGGTAGAGAGAGAGAAATCATCATTTTCAGTTG
TGTTAGAGCACCAGTTGAAGAGGGTGCAGGTATTGGTTTTCTTTCAGATGTTCGTCGTAT
GAATGTAGCTTTAACACGTCCAAGATCATNTCTATTGATCNTTGGTAATACTAAAGCATT
AAGTATCAACAAAGATTGGAATGAATTAATTCAACATACTCAAAACAATCAACAATTAAT
TCNTGTTACCAAAGATCAACCATTAGAAATTATCATACCAACTTTTACAAATCGTGAATT
ATTTACCGAACTCTATGAAAAAGGTCAACAAATTGTAATTCCAAAACCAAGAACTGAAGA
AGAAATTAATCTTCAAAAACAAAAAGATATTGAAAAAAGAAAGAAACTACATAAAAGAC
Length of 3' end seq. 419
Connected seq. ID VHF690P
Connected seq. 
>VHF690P.Seq
AGCACCTCCAATAAAATCAATTACTTCAATCGATAATGATGATAACGTTGATGGTGTTAT
TGAAAAGTCAGTCAAAAAACCAGTATCTTTAACATTTGATCAAATCATTGATAGATTTTA
TAAACATATTTTAACATGGGATGCATCAGATTTATCACCAAAGGAAAAAGAATTAAAACC
AGTAAAAGT----------ACCGTAGATGGTTTCCAAGGTAGAGAGAGAGAAATCATCAT
TTTCAGTTGTGTTAGAGCACCAGTTGAAGAGGGTGCAGGTATTGGTTTTCTTTCAGATGT
TCGTCGTATGAATGTAGCTTTAACACGTCCAAGATCATNTCTATTGATCNTTGGTAATAC
TAAAGCATTAAGTATCAACAAAGATTGGAATGAATTAATTCAACATACTCAAAACAATCA
ACAATTAATTCNTGTTACCAAAGATCAACCATTAGAAATTATCATACCAACTTTTACAAA
TCGTGAATTATTTACCGAACTCTATGAAAAAGGTCAACAAATTGTAATTCCAAAACCAAG
AACTGAAGAAGAAATTAATCTTCAAAAACAAAAAGATATTGAAAAAAGAAAGAAACTACA
TAAAAGAC
Length of connected seq. 598
Full length Seq ID -
Full length Seq. -
Length of full length seq. -