VHF675
Library VH
(Link to library)
Clone ID VHF675
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10739-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF675 (VHF675Q) /CSM/VH/VHF6-D/VHF675Q.Seq.d/
ATATCACACAAAAACAGTTTAAAGTATAATTTTTAATTATTCATTACCAATTTTTTTCAA
TAAATAAATTTTAAAAATGTCAGAAACCAAACCAGCCTCATCCAAACCAGCCGCTGCTGC
CAAACCAAAGAAAGTCATTCCACGTGTAAGCAGAACAGGTGAACCAAAGAGCAAACCAGA
ATCACGTTCAGCTCGTGCCGGTATCACTTTCCCAGTATCTCGTGTTGATAGATTATTACG
TGAAGGTAGATTCGCTCCACGTGTTGAAAGTACCGCACCAGTCTATTTAGCTGCCGTCCT
TGAATATTTAGTATTTGAAATTTTAGAGTTAGCTCACAATACTTGTTCAATCAGTAAAAA
GACCCGTATCACACCACAACACATCAACTGGGCCGTCGGTAATGATCTTGAATTAAATTC
TCTCTTCCAACACGTTACCATCGCCTACGGTGGTGTTTTACCAACTCCACAACAATCCAC
CGGTGAAAAGAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
yhtktv*siifnyslpiffnk*ILKMSETKPASSKPAAAAKPKKVIPRVSRTGEPKSKPE
SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKK
TRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEK---


Translated Amino Acid sequence (All Frames)
Frame A:
ishknslkynf*lfitnffq*infknvrnqtsliqtsrccqtkeshstckqnr*tkeqtr
itfsscryhfpsisc**iit*r*irstc*kyrtslfscrp*ifsi*nfrvssqylfnq*k
dpyhttthqlgrr**s*ikfslptryhrlrwcftnsttihr*k---


Frame B:
yhtktv*siifnyslpiffnk*ILKMSETKPASSKPAAAAKPKKVIPRVSRTGEPKSKPE
SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKK
TRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEK---


Frame C:
itqkqfkv*fliihyqffsinkf*kcqkpnqphpnqpllpnqrksfhv*aeqvnqranqn
hvqlvpvslsqylvlidyyvkvdslhvlkvphqsi*lpslni*ylkf*s*ltilvqsvkr
pvshhntstgpsvmiln*ilssntlpsptvvfyqlhnnppvk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK231 (VHK231Q) /CSM/VH/VHK2-B/VHK231Q.Seq.d/ 932 0.0
VHF675 (VHF675Q) /CSM/VH/VHF6-D/VHF675Q.Seq.d/ 932 0.0
VHE472 (VHE472Q) /CSM/VH/VHE4-C/VHE472Q.Seq.d/ 924 0.0
AHG133 (AHG133Q) /CSM/AH/AHG1-B/AHG133Q.Seq.d/ 916 0.0
AHQ801 (AHQ801Q) /CSM/AH/AHQ8-A/AHQ801Q.Seq.d/ 914 0.0
AFB471 (AFB471Q) /CSM/AF/AFB4-C/AFB471Q.Seq.d/ 908 0.0
SLB145 (SLB145Q) /CSM/SL/SLB1-B/SLB145Q.Seq.d/ 900 0.0
SHF389 (SHF389Q) /CSM/SH/SHF3-D/SHF389Q.Seq.d/ 896 0.0
SSE821 (SSE821Q) /CSM/SS/SSE8-A/SSE821Q.Seq.d/ 884 0.0
SSF102 (SSF102Q) /CSM/SS/SSF1-A/SSF102Q.Seq.d/ 876 0.0

own update 2002.12.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424111) Dictyostelium discoideum cDNA clone:ddv51m08, 5' ... 860 0.0 2
(BJ442943) Dictyostelium discoideum cDNA clone:ddv51m08, 3' ... 860 0.0 2
(BJ421478) Dictyostelium discoideum cDNA clone:ddv42e20, 5' ... 860 0.0 2
(BJ420572) Dictyostelium discoideum cDNA clone:ddv39p18, 5' ... 852 0.0 2
(BJ351381) Dictyostelium discoideum cDNA clone:dda43a09, 3' ... 844 0.0 2
(BJ339061) Dictyostelium discoideum cDNA clone:dda64b02, 5' ... 852 0.0 2
(BJ439198) Dictyostelium discoideum cDNA clone:ddv39p18, 3' ... 837 0.0 2
(BJ340755) Dictyostelium discoideum cDNA clone:dda3n18, 3' e... 837 0.0 2
(AU033538) Dictyostelium discoideum slug cDNA, clone SLB145. 860 0.0 2
(BJ406282) Dictyostelium discoideum cDNA clone:dds34b23, 3' ... 835 0.0 2
dna update 2008.10.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU853691_1(EU853691|pid:none) Adineta vaga histone H2A variant H... 125 6e-28
AL606464_5(AL606464|pid:none) Mouse DNA sequence from clone RP23... 124 1e-27
EU853699_1(EU853699|pid:none) Philodina roseola histone H2A vari... 124 2e-27
(Q0U1A1) RecName: Full=Histone H2A; 122 4e-27
(A3LXE7) RecName: Full=Histone H2A.2; &CP000500_276(CP000500|pi... 122 6e-27
AY894000_1(AY894000|pid:none) Synthetic construct Homo sapiens c... 122 6e-27
(Q6BRG3) RecName: Full=Histone H2A.2; &CR382136_721(CR382136|pi... 122 6e-27
(P0C169) RecName: Full=Histone H2A type 1-C; &(Q93077) RecName:... 122 6e-27
(A5DBG4) RecName: Full=Histone H2A.1; 121 8e-27
(A5DWF1) RecName: Full=Histone H2A.1; 121 8e-27
protein update 2009. 7. 4
PSORT

psg: 0.72 gvh: 0.28 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.06
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal

>> prediction for VHF675 is cyt

5' end seq. ID VHF675F
5' end seq.
>VHF675F.Seq
ATATCACACAAAAACAGTTTAAAGTATAATTTTTAATTATTCATTACCAATTTTTTTCAA
TAAATAAATTTTAAAAATGTCAGAAACCAAACCAGCCTCATCCAAACCAGCCGCTGCTGC
CAAACCAAAGAAAGTCATTCCACGTGTAAGCAGAACAGGTGAACCAAAGAGCAAACCAGA
ATCACGTTCAGCTCGTGCCGGTATCACTTTCCCAGTATCTCGTGTTGATAGATTATTACG
TGAAGGTAGATTCGCTCCACGTGTTGAAAGTACCGCACCAGTCTATTTAGCTGCCGTCCT
TGAATATTTAGTATTTGAAATTTTAGAGTTAGCTCACAATACTTGTTCAATCAGTAAAAA
GACCCGTATCACACCACAACACATCAACTGGGCCGTCGGTAATGATCTTGAATTAAATTC
TCTCTTCCAACACGTTACCATCGCCTACGGTGGTGTTTTACCAACTCCACAACAATCCAC
CGGTGAAAAGANNNNNNNNNN
Length of 5' end seq. 501
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -