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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF669
Library VH
(Link to library)
Clone ID VHF669
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF669 (VHF669Q) /CSM/VH/VHF6-C/VHF669Q.Seq.d/
XXXXXXXXXXATTTAATCATCCCCTTTAAACCNATTTGTAAATTTTTGANAAGGCCAATT
CGATTTCATTANAGTCNTTCCCAGTACCAGGTGTTTTTTCATTAGCTGTTANAATCNATT
TGAAAGAGANCCAAGAGAAATTCGATNCNGNTTTTGAAAGAATTAAAGAGGTCNCTAAAG
TAGATTGGTCTTATGATGAGCAATCATTGGAAACTGTTTATCCAGCNCTTGAAGAAAGAA
ATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCG
TTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCTTCGAAGCAACTTCAAATGCAA
AGATTGTTTTCCGTCNCAATGCCAAAGCNAACGGTTATTGGAATTGGAGTTTTGAAAACA
ATGATTTAGTAATCACNTTCAAATCAATTTGCAATGTTAGTGATAATGCNAACTTTGATT
TCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCNTCTAGAATCAATTTGAGAG
AGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATT
GGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAAC
CACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAA
GATGTAAAGATGATGATAGGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAA
TCGTCTTCCNATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---fnhpl*txl*IFXKANSISLXSFPVPGVFSLAVXIXLKEXQEKFDXXFERIKEVXKV
DWSYDEQSLETVYPALEERNKERIGDLFQEIIKYVADNIVKRCKEDMVLESFFEATSNAK
IVFRXNAKANGYWNWSFENNDLVITFKSICNVSDNANFDFIKILPSPGVLTLASRINLRE
NQEKINESFEKIKEVLGNDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYISQNIVKR
CKDDDRVKEGFVEATQNCKIVFXFVEKQSSYWVWKF
Translated Amino Acid sequence (All Frames) 
Frame A:
---fnhpl*txl*IFXKANSISLXSFPVPGVFSLAVXIXLKEXQEKFDXXFERIKEVXKV
DWSYDEQSLETVYPALEERNKERIGDLFQEIIKYVADNIVKRCKEDMVLESFFEATSNAK
IVFRXNAKANGYWNWSFENNDLVITFKSICNVSDNANFDFIKILPSPGVLTLASRINLRE
NQEKINESFEKIKEVLGNDWTYDESSIEQVYPKLEENNKPRVGDVFAEIIRYISQNIVKR
CKDDDRVKEGFVEATQNCKIVFXFVEKQSSYWVWKF


Frame B:
---liipfkpickflxrpirfhxsxsqyqvffh*llxsi*krxkrnsxxxlkelkrslk*
iglmmsnhwklfiqxlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqr
lfsvxmpkxtvigigvlktmi**sxsnqfamlvimxtlislkfyhhqvysl*xlesi*er
ikrksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkd
vkmmigskkvslkqlkivksssxllknkvligfgns


Frame C:
---*ssplnxfvnf*xgqfdfixvxpstrcffiscxnxferxpreirxxf*kn*rgx*sr
lvl**aiignclssx*rkk*rknw*liprdy*icr**yr*tl*rgygfrkflrsnfkckd
cfpsqcqsxrllelef*kq*fsnhxqinlqc***cxl*fh*nftitrcthfsx*nqfere
srenq*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km
*r***gqrrfr*snskl*nrlpic*ktkfllgleir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF669 (VHF669Q) /CSM/VH/VHF6-C/VHF669Q.Seq.d/                       1522   0.0
VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/                       1427   0.0
VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/                       1411   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1402   0.0
VHJ644 (VHJ644Q) /CSM/VH/VHJ6-B/VHJ644Q.Seq.d/                       1398   0.0
VHJ386 (VHJ386Q) /CSM/VH/VHJ3-D/VHJ386Q.Seq.d/                       1388   0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/                       1388   0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/                       1386   0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/                       1380   0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/                       1378   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440095) Dictyostelium discoideum cDNA clone:ddv42i18, 3' ...  1522   0.0    1
(BJ436922) Dictyostelium discoideum cDNA clone:ddv32k16, 3' ...  1409   0.0    1
(BJ437910) Dictyostelium discoideum cDNA clone:ddv35b24, 3' ...  1402   0.0    2
(BJ445762) Dictyostelium discoideum cDNA clone:ddv60f16, 3' ...  1370   0.0    1
(BJ445760) Dictyostelium discoideum cDNA clone:ddv60e18, 3' ...  1370   0.0    1
(BJ442583) Dictyostelium discoideum cDNA clone:ddv50g12, 3' ...  1370   0.0    2
(BJ436501) Dictyostelium discoideum cDNA clone:ddv31j09, 3' ...  1370   0.0    2
(BJ445947) Dictyostelium discoideum cDNA clone:ddv61l04, 3' ...  1368   0.0    2
(BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ...  1368   0.0    2
(BJ442069) Dictyostelium discoideum cDNA clone:ddv48b22, 3' ...  1366   0.0    1
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   132   1e-29
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   132   2e-29
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.032
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete...    39   0.27
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    38   0.46
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   0.60
AL031745_13(AL031745|pid:none) Plasmodium falciparum DNA from MA...    37   0.79
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot...    36   1.3
AJ248284_9(AJ248284|pid:none) Pyrococcus abyssi complete genome;...    36   1.8
CP000962_788(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    36   1.8
protein update 2009. 7. 4
PSORT 

 psg: 0.93  gvh: 0.58  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHF669 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF669Z
3' end seq. 
>VHF669Z.Seq
NNNNNNNNNNATTTAATCATCCCCTTTAAACCNATTTGTAAATTTTTGANAAGGCCAATT
CGATTTCATTANAGTCNTTCCCAGTACCAGGTGTTTTTTCATTAGCTGTTANAATCNATT
TGAAAGAGANCCAAGAGAAATTCGATNCNGNTTTTGAAAGAATTAAAGAGGTCNCTAAAG
TAGATTGGTCTTATGATGAGCAATCATTGGAAACTGTTTATCCAGCNCTTGAAGAAAGAA
ATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCG
TTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCTTCGAAGCAACTTCAAATGCAA
AGATTGTTTTCCGTCNCAATGCCAAAGCNAACGGTTATTGGAATTGGAGTTTTGAAAACA
ATGATTTAGTAATCACNTTCAAATCAATTTGCAATGTTAGTGATAATGCNAACTTTGATT
TCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCNTCTAGAATCAATTTGAGAG
AGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATT
GGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAAC
CACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAA
GATGTAAAGATGATGATAGGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAA
TCGTCTTCCNATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGA
Length of 3' end seq. 832
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -