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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF641
Library VH
(Link to library)
Clone ID VHF641
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11064-1
Original site URL
Representative seq. ID VHF641P
(Link to Original site)
Representative DNA sequence 
>VHF641 (VHF641Q) /CSM/VH/VHF6-B/VHF641Q.Seq.d/
ATGACTGATGATGAAGATACTGCACCAACTTCTGCTGCAACTCATGTTGGTGCACCAACA
AAATCAACTACTACAACTACAACAACTACAACAACAACTACTACTACAACTACTACAGCA
ACXXXXXXXXXXACATTCCATCAAGAGCTACACACTATCATTCAAATCCTTTCTTTGGTC
CATTGGTATTCTATGATCTATCATGGAGTACTGAAACCAAACCCGGTGGTGGTTCAGTTT
TCAATGAGCATGAATGTAAGATGGCTATGTATCTATTCCAATTGTTTACCAAAGTTTATC
TTGATGAAGATTTTGCAAGTCGTATTGGTATCATTTCACCATATCGTCAACAGGTTTTAG
CATTACGTGAAATCTTTAAAAACTATCNTGGTATCTCTATTGATACCGTAGATGGTTTCC
AAGGTAGAGAGAGAGAAATCATCATTTTCAGTTGTGTTAGAGCACCAGTTGAAGAGGGTG
CAGGTATTGGTTTTCTTTCAGATGTTCGTCGTATGAATGTAGCTTTAACACGTCCAAGAT
CATNTCTATTGATCNTTGGTAATACTAAAGCATTAAGTATCAACAAAGATTGGAATGAAT
TAATTCAACATANTCAAAACAATCAACAATTAATTCNTGTTACCAAAGATCAACCATTAG
AAATTATCATACCAACTTTTACAACTCGTGAATTATTTACCGAACTACTCTAAAAAGGTC
AACAAATTGTAATTCCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
MTDDEDTAPTSAATHVGAPTKSTTTTTTTTTTTTTTTTTA---

---IPSRATHYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYLD
EDFASRIGIISPYRQQVLALREIFKNYXGISIDTVDGFQGREREIIIFSCVRAPVEEGAG
IGFLSDVRRMNVALTRPRSXLLIXGNTKALSINKDWNELIQHXQNNQQLIXVTKDQPLEI
IIPTFTTRELFTELL*kgqqivip
Translated Amino Acid sequence (All Frames) 
Frame A:
MTDDEDTAPTSAATHVGAPTKSTTTTTTTTTTTTTTTTTA---

---tfhqelhtiiqilslvhwysmiyhgvlkpnpvvvqfsmsmnvrwlciysnclpkfil
mkilqvvlvsfhhivnrf*hyvkslktixvsllip*mvskverekssfsvvlehqlkrvq
vlvffqmfvv*m*l*hvqdhxy*slvilkh*vstkigmn*fnixktinn*fxlpkinh*k
lsyqllqlvnylpnyskkvnkl*fq

Frame B:
*lmmkilhqlllqlmlvhqqnqllqlqqlqqqlllqllqq---

---hsiksytlsfksflwsigil*simey*nqtrwwfsfq*a*m*dgyvsipivyqsls*
*rfcksywyhftisstgfsit*nl*klswyly*yrrwfpr*rernhhfqlc*sts*rgcr
ywfsfrcssyecsfntskixsidxw*y*sikyqqrle*instxskqstinscyqrstirn
yhtnfyns*iiyrttlkrstncnsk

Frame C:
d***ryctnfccnscwctnkinyynynnynnnyyynyysn---

---IPSRATHYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYLD
EDFASRIGIISPYRQQVLALREIFKNYXGISIDTVDGFQGREREIIIFSCVRAPVEEGAG
IGFLSDVRRMNVALTRPRSXLLIXGNTKALSINKDWNELIQHXQNNQQLIXVTKDQPLEI
IIPTFTTRELFTELL*kgqqivip
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF641 (VHF641Q) /CSM/VH/VHF6-B/VHF641Q.Seq.d/                       1174   0.0
CHQ461 (CHQ461Q) /CSM/CH/CHQ4-C/CHQ461Q.Seq.d/                       1168   0.0
VHA411 (VHA411Q) /CSM/VH/VHA4-A/VHA411Q.Seq.d/                       1144   0.0
AHM694 (AHM694Q) /CSM/AH/AHM6-D/AHM694Q.Seq.d/                       1144   0.0
VHD787 (VHD787Q) /CSM/VH/VHD7-D/VHD787Q.Seq.d/                       1142   0.0
AHK694 (AHK694Q) /CSM/AH/AHK6-D/AHK694Q.Seq.d/                       1142   0.0
VHJ817 (VHJ817Q) /CSM/VH/VHJ8-A/VHJ817Q.Seq.d/                       1136   0.0
VHJ633 (VHJ633Q) /CSM/VH/VHJ6-B/VHJ633Q.Seq.d/                       1136   0.0
VHJ181 (VHJ181Q) /CSM/VH/VHJ1-D/VHJ181Q.Seq.d/                       1136   0.0
VHC442 (VHC442Q) /CSM/VH/VHC4-B/VHC442Q.Seq.d/                       1136   0.0
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439974) Dictyostelium discoideum cDNA clone:ddv42a12, 3' ...  1174   0.0    1
(BJ385337) Dictyostelium discoideum cDNA clone:ddc54j16, 3' ...  1168   0.0    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...  1100   0.0    2
(BJ442547) Dictyostelium discoideum cDNA clone:ddv50a10, 3' ...  1100   0.0    2
(BJ442480) Dictyostelium discoideum cDNA clone:ddv50b06, 3' ...  1100   0.0    2
(BJ442392) Dictyostelium discoideum cDNA clone:ddv49a21, 3' ...  1100   0.0    2
(BJ438935) Dictyostelium discoideum cDNA clone:ddv38n21, 3' ...  1100   0.0    2
(BJ437757) Dictyostelium discoideum cDNA clone:ddv35d12, 3' ...  1100   0.0    2
(BJ436921) Dictyostelium discoideum cDNA clone:ddv32k15, 3' ...  1100   0.0    2
(BJ436403) Dictyostelium discoideum cDNA clone:ddv31f04, 3' ...  1100   0.0    2
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86AS0) RecName: Full=Probable helicase DDB_G0274399;          ...   336   4e-91
CR382134_383(CR382134|pid:none) Debaryomyces hansenii strain CBS...   125   1e-27
AP005852_20(AP005852|pid:none) Oryza sativa Japonica Group genom...   124   4e-27
AL731628_17(AL731628|pid:none) Oryza sativa genomic DNA, chromos...   124   4e-27
T52521(T52521)related to SEN1 protein [imported] - Neurospora cr...   123   5e-27
AL442164_16(AL442164|pid:none) Neurospora crassa DNA linkage gro...   123   5e-27
FN392320_629(FN392320|pid:none) Pichia pastoris GS115 chromosome...   121   3e-26
AP008209_1815(AP008209|pid:none) Oryza sativa (japonica cultivar...   120   3e-26
AC097367_10(AC097367|pid:none) Oryza sativa chromosome 3 BAC OSJ...   120   3e-26
CU928168_666(CU928168|pid:none) Kluyveromyces thermotolerans str...   117   3e-25
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHF641 is cyt
5' end seq. ID VHF641F
5' end seq. 
>VHF641F.Seq
ATGACTGATGATGAAGATACTGCACCAACTTCTGCTGCAACTCATGTTGGTGCACCAACA
AAATCAACTACTACAACTACAACAACTACAACAACAACTACTACTACAACTACTACAGCA
ACNNNNNNNNNN
Length of 5' end seq. 132
3' end seq. ID VHF641Z
3' end seq. 
>VHF641Z.Seq
NNNNNNNNNNACATTCCATCAAGAGCTACACACTATCATTCAAATCCTTTCTTTGGTCCA
TTGGTATTCTATGATCTATCATGGAGTACTGAAACCAAACCCGGTGGTGGTTCAGTTTTC
AATGAGCATGAATGTAAGATGGCTATGTATCTATTCCAATTGTTTACCAAAGTTTATCTT
GATGAAGATTTTGCAAGTCGTATTGGTATCATTTCACCATATCGTCAACAGGTTTTAGCA
TTACGTGAAATCTTTAAAAACTATCNTGGTATCTCTATTGATACCGTAGATGGTTTCCAA
GGTAGAGAGAGAGAAATCATCATTTTCAGTTGTGTTAGAGCACCAGTTGAAGAGGGTGCA
GGTATTGGTTTTCTTTCAGATGTTCGTCGTATGAATGTAGCTTTAACACGTCCAAGATCA
TNTCTATTGATCNTTGGTAATACTAAAGCATTAAGTATCAACAAAGATTGGAATGAATTA
ATTCAACATANTCAAAACAATCAACAATTAATTCNTGTTACCAAAGATCAACCATTAGAA
ATTATCATACCAACTTTTACAACTCGTGAATTATTTACCGAACTACTCTAAAAAGGTCAA
CAAATTGTAATTCCAAA
Length of 3' end seq. 617
Connected seq. ID VHF641P
Connected seq. 
>VHF641P.Seq
ATGACTGATGATGAAGATACTGCACCAACTTCTGCTGCAACTCATGTTGGTGCACCAACA
AAATCAACTACTACAACTACAACAACTACAACAACAACTACTACTACAACTACTACAGCA
AC----------ACATTCCATCAAGAGCTACACACTATCATTCAAATCCTTTCTTTGGTC
CATTGGTATTCTATGATCTATCATGGAGTACTGAAACCAAACCCGGTGGTGGTTCAGTTT
TCAATGAGCATGAATGTAAGATGGCTATGTATCTATTCCAATTGTTTACCAAAGTTTATC
TTGATGAAGATTTTGCAAGTCGTATTGGTATCATTTCACCATATCGTCAACAGGTTTTAG
CATTACGTGAAATCTTTAAAAACTATCNTGGTATCTCTATTGATACCGTAGATGGTTTCC
AAGGTAGAGAGAGAGAAATCATCATTTTCAGTTGTGTTAGAGCACCAGTTGAAGAGGGTG
CAGGTATTGGTTTTCTTTCAGATGTTCGTCGTATGAATGTAGCTTTAACACGTCCAAGAT
CATNTCTATTGATCNTTGGTAATACTAAAGCATTAAGTATCAACAAAGATTGGAATGAAT
TAATTCAACATANTCAAAACAATCAACAATTAATTCNTGTTACCAAAGATCAACCATTAG
AAATTATCATACCAACTTTTACAACTCGTGAATTATTTACCGAACTACTCTAAAAAGGTC
AACAAATTGTAATTCCAAA
Length of connected seq. 729
Full length Seq ID -
Full length Seq. -
Length of full length seq. -