NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF553
Library VH
(Link to library)
Clone ID VHF553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID VHF553P
(Link to Original site)
Representative DNA sequence 
>VHF553 (VHF553Q) /CSM/VH/VHF5-C/VHF553Q.Seq.d/
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATXXXXXXXX
XXACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGT
TACCGTTAAACCAGCCCCATCCGNTGAACAATNTTATGCTGAAGGTGAAGGTTTAGTCAA
AGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGC
TCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGT
TGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGT
TGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAAT
CGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTT
TACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGA
AGTNTCTATCACTGGTCCAGCTGAAGATAATCTGCNTCTTCAGTG
sequence update 2002.10.25
Translated Amino Acid sequence 
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIY---

---YVINLTLDGDNVNGFPKTVTVKPAPSXEQXYAEGEGLVKVFDNAPAEFTIFAVDTKG
VARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNM
PIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAEDNLXLQ
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpflfiyllnyylfikllfielcklpsnkf*yfvyi---

---tmlsisl*mvttsmvsqrllplnqphpxnnxmlkvkv*skylimpqlnslfspltlk
vllvpmvvihlkslsmvqmv*slmpklpitmtvlmvlsmmpqlkvttmlmspsvviqski
cqsmsnalkvpmvkihhsvhsllpsllkirkvklkpmvvinlkxlslvqlkiicxfs

Frame B:
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIY---

---lcyqshfrw*qrqwfpkdcyr*tspir*txlc*r*rfsqsi**cps*ihyfrr*h*r
ccsyrww*si*sryqwsrwfsr*cqsyr*q*rylwccl*cps*r*lqc*chppw*snqky
anrcqmh*rcqw*rfiirfihfyrrc*k*er*s*nlww**i*sxyhwss*r*sassv

Frame C:
ltifiylfikllfiy*iiiy*vv*ttfq*ilifciy---

---YVINLTLDGDNVNGFPKTVTVKPAPSXEQXYAEGEGLVKVFDNAPAEFTIFAVDTKG
VARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNM
PIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAEDNLXLQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF553 (VHF553Q) /CSM/VH/VHF5-C/VHF553Q.Seq.d/                       1070   0.0
SHF441 (SHF441Q) /CSM/SH/SHF4-B/SHF441Q.Seq.d/                       1005   0.0
CHH168 (CHH168Q) /CSM/CH/CHH1-C/CHH168Q.Seq.d/                       1005   0.0
CHG870 (CHG870Q) /CSM/CH/CHG8-C/CHG870Q.Seq.d/                       1005   0.0
AHF871 (AHF871Q) /CSM/AH/AHF8-C/AHF871Q.Seq.d/                       1005   0.0
AHF524 (AHF524Q) /CSM/AH/AHF5-A/AHF524Q.Seq.d/                       1005   0.0
AHF333 (AHF333Q) /CSM/AH/AHF3-B/AHF333Q.Seq.d/                       1005   0.0
AHA203 (AHA203Q) /CSM/AH/AHA2-A/AHA203Q.Seq.d/                       1005   0.0
VHE484 (VHE484Q) /CSM/VH/VHE4-D/VHE484Q.Seq.d/                       1003   0.0
SHK588 (SHK588Q) /CSM/SH/SHK5-D/SHK588Q.Seq.d/                       1003   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X15430) Dictyostelium discoideum mRNA for gelation factor.       975   0.0    2
(BJ440090) Dictyostelium discoideum cDNA clone:ddv42i13, 3' ...  1013   0.0    1
(BJ406131) Dictyostelium discoideum cDNA clone:dds34b12, 3' ...  1005   0.0    1
(BJ379966) Dictyostelium discoideum cDNA clone:ddc36g17, 3' ...  1005   0.0    1
(BJ379685) Dictyostelium discoideum cDNA clone:ddc35l18, 3' ...  1005   0.0    1
(BJ351291) Dictyostelium discoideum cDNA clone:dda42n18, 3' ...  1005   0.0    1
(BJ351148) Dictyostelium discoideum cDNA clone:dda42o05, 3' ...  1005   0.0    1
(BJ350859) Dictyostelium discoideum cDNA clone:dda41b09, 3' ...  1005   0.0    1
(BJ347743) Dictyostelium discoideum cDNA clone:dda31e02, 3' ...  1005   0.0    1
(BJ439242) Dictyostelium discoideum cDNA clone:ddv39h22, 3' ...  1003   0.0    1
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    85   2e-15
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    74   5e-12
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    67   6e-10
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    67   6e-10
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    67   6e-10
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    67   6e-10
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    67   6e-10
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    67   6e-10
(Q8BTM8) RecName: Full=Filamin-A; AltName: Full=Alpha-filamin; A...    67   6e-10
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    65   2e-09
protein update 2009. 7. 4
PSORT 

 psg: 0.89  gvh: 0.45  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHF553 is cyt
5' end seq. ID VHF553F
5' end seq. 
>VHF553F.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATNNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID VHF553Z
3' end seq. 
>VHF553Z.Seq
NNNNNNNNNNACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCA
AAGACTGTTACCGTTAAACCAGCCCCATCCGNTGAACAATNTTATGCTGAAGGTGAAGGT
TTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAA
GGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGT
TTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGAT
GCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAAT
ATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCA
TTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGAT
AAATTTGAAGTNTCTATCACTGGTCCAGCTGAAGATAATCTGCNTCTTCAGTG
Length of 3' end seq. 533
Connected seq. ID VHF553P
Connected seq. 
>VHF553P.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATAT--------
--ACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGT
TACCGTTAAACCAGCCCCATCCGNTGAACAATNTTATGCTGAAGGTGAAGGTTTAGTCAA
AGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGC
TCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGT
TGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGT
TGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAAT
CGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTT
TACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGA
AGTNTCTATCACTGGTCCAGCTGAAGATAATCTGCNTCTTCAGTG
Length of connected seq. 635
Full length Seq ID -
Full length Seq. -
Length of full length seq. -