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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF536
Library VH
(Link to library)
Clone ID VHF536
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16531-1
Original site URL
Representative seq. ID VHF536P
(Link to Original site)
Representative DNA sequence 
>VHF536 (VHF536Q) /CSM/VH/VHF5-B/VHF536Q.Seq.d/
CTGCCGGTGCTATCGAAGGTCAAATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACT
ATATAGATGCTGCACTTGATTTCAAAAGTGATGACCGTACATTAAATGTCATTATCACTT
TTTTATGGTGGATATTTTTTGTAATTATCAATATGATTGCTTTGGAATTATTCGATTGGA
CAAGTGGTGGTATGCCTCATAAAGTCTATAAAAGANGAAAGGCTCCTAAAATCAACGATG
ACGAAXXXXXXXXXXTAAGAAAGATTATGCCTNTAAATTTTANTCTTGGTGTCCATTTGC
CATTTCAATTGTCATTGTTGAATTACCTTTTGTTGCAGTCGCTGGAACAATTTGTNTCTT
TTGTTCTTTTTGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATAT
AACTTTCATCATCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTG
TTTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTT
TTGTGGAGTACTCGTTCNTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTC
AAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGT
TGATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGA
ATATTTCAAGCCAACNTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATG
TGGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTCTTGGTTGGTCTTATGA
AAACCGTTTAAGAAACTATGGTATTTTATGGGCTTTCTTTATTTTCAACATAATTAGGGT
TGTTTCCTTTGTTTATTTAACAAAAAAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
AGAIEGQMVNGEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWT
SGGMPHKVYKRXKAPKINDDE---

---KKDYAXKFXSWCPFAISIVIVELPFVAVAGTICXFCSFWTAGIYYNGEYDFYFYITF
IIFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFCGVLVXYEQIPNFWKFVYHSNP
CRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEYFKPTYGNVRAVTKGDESECGY
CVFKSGEEYYKTLGWSYENRLRNYGILWAFFIFNIIRVVSFVYLTKK
Translated Amino Acid sequence (All Frames) 
Frame A:
lpvlskvkwlmvnfmllvqti*mlhliskvmtvh*mslslfyggyfl*lsi*llwnysig
qvvvcliksikxerllkstmt---

---*erlcl*ilxlvsichfnchc*itfccsrwnnlxllffldsryllqw*i*flflynf
hhlpfhlcftwsscicllfqcyvgsnnfttfisnvisflwstrsl*tnsklleirlsfks
mplflrrccnisfkecfc*lfk*rfnqilkpnkfnl*rifqanxwkcsccyqrr*k*mwl
lcf*ir*ril*nswlvl*kpfkklwyfmgflyfqhn*gcflclfnkkt

Frame B:
crcyrrsng*w*ilccwfklyrcct*fqk**pyikchyhffmvdifcnyqydcfgiirld
kwwyas*sl*kxkgs*nqr*r---

---KKDYAXKFXSWCPFAISIVIVELPFVAVAGTICXFCSFWTAGIYYNGEYDFYFYITF
IIFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFCGVLVXYEQIPNFWKFVYHSNP
CRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEYFKPTYGNVRAVTKGDESECGY
CVFKSGEEYYKTLGWSYENRLRNYGILWAFFIFNIIRVVSFVYLTKK

Frame C:
AGAIEGQMVNGEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWT
SGGMPHKVYKRXKAPKINDDE---

---rkimpxnfxlgvhlpfqlsllnylllqsleqfvsfvlfgqqvfitmvnmififi*ls
sssfsfvfhlvklylpfvsmlcwlkqfyhfy**cyfffveysfxmnkfqtfgnsfiiqih
avis*kvl*hqf*rmfllivqmki*pnsqtqqi*pvknissqxmemfvllpkamkvnvvi
vflnqvkniikllvglmktv*etmvfyglslfst*lglfplfi*qkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF536 (VHF536Q) /CSM/VH/VHF5-B/VHF536Q.Seq.d/                       1731   0.0
VHK794 (VHK794Q) /CSM/VH/VHK7-D/VHK794Q.Seq.d/                       1267   0.0
VHI319 (VHI319Q) /CSM/VH/VHI3-A/VHI319Q.Seq.d/                       1261   0.0
VHI257 (VHI257Q) /CSM/VH/VHI2-C/VHI257Q.Seq.d/                       1259   0.0
SHA149 (SHA149Q) /CSM/SH/SHA1-C/SHA149Q.Seq.d/                       1253   0.0
VHE474 (VHE474Q) /CSM/VH/VHE4-D/VHE474Q.Seq.d/                       1251   0.0
VHD657 (VHD657Q) /CSM/VH/VHD6-C/VHD657Q.Seq.d/                       1251   0.0
VHB406 (VHB406Q) /CSM/VH/VHB4-A/VHB406Q.Seq.d/                       1251   0.0
VHA156 (VHA156Q) /CSM/VH/VHA1-C/VHA156Q.Seq.d/                       1251   0.0
SHF280 (SHF280Q) /CSM/SH/SHF2-D/SHF280Q.Seq.d/                       1251   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440001) Dictyostelium discoideum cDNA clone:ddv42g09, 3' ...  1291   0.0    1
(BJ403232) Dictyostelium discoideum cDNA clone:dds24a13, 3' ...  1247   0.0    1
(BJ444990) Dictyostelium discoideum cDNA clone:ddv58h04, 3' ...  1241   0.0    1
(BJ445513) Dictyostelium discoideum cDNA clone:ddv59n17, 3' ...  1237   0.0    1
(BJ444212) Dictyostelium discoideum cDNA clone:ddv55j17, 3' ...  1237   0.0    1
(BJ443433) Dictyostelium discoideum cDNA clone:ddv52l23, 3' ...  1237   0.0    2
(BJ442841) Dictyostelium discoideum cDNA clone:ddv51j06, 3' ...  1237   0.0    1
(BJ442633) Dictyostelium discoideum cDNA clone:ddv50b17, 3' ...  1237   0.0    1
(BJ442555) Dictyostelium discoideum cDNA clone:ddv50b12, 3' ...  1237   0.0    1
(BJ441679) Dictyostelium discoideum cDNA clone:ddv47a16, 3' ...  1237   0.0    2
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF482389_1(AF482389|pid:none) Dictyostelium discoideum ABC trans...   389   e-106
AF482396_1(AF482396|pid:none) Dictyostelium discoideum ABC trans...   233   7e-60
AF482391_1(AF482391|pid:none) Dictyostelium discoideum ABC trans...   229   8e-59
AF482390_1(AF482390|pid:none) Dictyostelium discoideum ABC trans...   221   4e-56
AF037042_1(AF037042|pid:none) Dictyostelium discoideum ras-relat...   210   5e-53
AF482393_1(AF482393|pid:none) Dictyostelium discoideum ABC trans...   209   1e-52
AF482395_1(AF482395|pid:none) Dictyostelium discoideum ABC trans...   143   7e-33
CU928176_508(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   101   4e-20
AM920427_990(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   100   7e-20
AB091269_1(AB091269|pid:none) Magnaporthe grisea ABC2 gene for A...    99   2e-19
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.13  top: 0.63  tms: 0.33  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VHF536 is pla
5' end seq. ID VHF536F
5' end seq. 
>VHF536F.Seq
CTGCCGGTGCTATCGAAGGTCAAATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACT
ATATAGATGCTGCACTTGATTTCAAAAGTGATGACCGTACATTAAATGTCATTATCACTT
TTTTATGGTGGATATTTTTTGTAATTATCAATATGATTGCTTTGGAATTATTCGATTGGA
CAAGTGGTGGTATGCCTCATAAAGTCTATAAAAGANGAAAGGCTCCTAAAATCAACGATG
ACGAANNNNNNNNNN
Length of 5' end seq. 255
3' end seq. ID VHF536Z
3' end seq. 
>VHF536Z.Seq
NNNNNNNNNNTAAGAAAGATTATGCCTNTAAATTTTANTCTTGGTGTCCATTTGCCATTT
CAATTGTCATTGTTGAATTACCTTTTGTTGCAGTCGCTGGAACAATTTGTNTCTTTTGTT
CTTTTTGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATATAACTT
TCATCATCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGTTTCA
ATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTTTTGTG
GAGTACTCGTTCNTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTCAAATC
CATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGTTGATT
GTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGAATATT
TCAAGCCAACNTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGTGGTT
ATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTCTTGGTTGGTCTTATGAAAACC
GTTTAAGAAACTATGGTATTTTATGGGCTTTCTTTATTTTCAACATAATTAGGGTTGTTT
CCTTTGTTTATTTAACAAAAAAACC
Length of 3' end seq. 685
Connected seq. ID VHF536P
Connected seq. 
>VHF536P.Seq
CTGCCGGTGCTATCGAAGGTCAAATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACT
ATATAGATGCTGCACTTGATTTCAAAAGTGATGACCGTACATTAAATGTCATTATCACTT
TTTTATGGTGGATATTTTTTGTAATTATCAATATGATTGCTTTGGAATTATTCGATTGGA
CAAGTGGTGGTATGCCTCATAAAGTCTATAAAAGANGAAAGGCTCCTAAAATCAACGATG
ACGAA----------TAAGAAAGATTATGCCTNTAAATTTTANTCTTGGTGTCCATTTGC
CATTTCAATTGTCATTGTTGAATTACCTTTTGTTGCAGTCGCTGGAACAATTTGTNTCTT
TTGTTCTTTTTGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATAT
AACTTTCATCATCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTG
TTTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTT
TTGTGGAGTACTCGTTCNTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTC
AAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGT
TGATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGA
ATATTTCAAGCCAACNTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATG
TGGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTCTTGGTTGGTCTTATGA
AAACCGTTTAAGAAACTATGGTATTTTATGGGCTTTCTTTATTTTCAACATAATTAGGGT
TGTTTCCTTTGTTTATTTAACAAAAAAACC
Length of connected seq. 920
Full length Seq ID -
Full length Seq. -
Length of full length seq. -